Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18822g00001 TCATTATCAGCTCTTGTTAAATTAGCTGGATCTCATGCAAACAAGGGAATTATTGCTTCCTCTGGTGGTGTTCCTCTTATTCTAGATTTAATGTTCTCTCCTCGGACATGGTCATTCATTACAATTAAATGCTCTGAAATCCTCGAGAAACTTTCTTCTTCTGATGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAGCTCGAGTTAGATTCAATCATCACAAACTTGCTAGTTTTGCAACAGAGTTCCAACTCAGGTCACAACCTTCGTAAGCCCACGCTACGCGCTCTTCTTGGCATCTGCAAGTTCGAGACTAGTTTGGTGAAAAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACATCTCGATGATTCCGACTCAGAAATCCGAGAGACTGCGATAAATCTGCTCTTTCTTTTCTCTCAGCACGAACCAGAAGGAGTAGTTGAATACCTCTTCAAGCCTAGAAGGTTAGAGGCTTTGATTGGATTCCTCGAGAACGATGACAATGATAATGTACAAATGGCTGCTGCTGGTTTACTAGCTAACCTACCGAAATCAGAACGAGAACTAACTAACAAGTTGATCGAAATGGGAGGACTTGATGCAATCTTAAGCATTTTAAAAACCGGTAAAATGGAAGCAAAAGAAAACGCTCTCAGCGCACTCTTCAGATTCACAGATCCTACAAATATCGAGTCACAGCGCGATTTGGTTAAACGCGGAATATATCCTTTACTTGTAGACTTTCTCAATACAGGCTCAGTCACTGCAAAGGCAATAGCAGCAGCTTTCATCGGCGATCTTTCTATGAGCACACCAAAGCTAACAGTTGTTTCCAAACCAAACGGTTGCTGGTTTTTCAGATCATCACGCGTTCCTTTATGCGCAGCGCACGATAGTGTATGCAGTGTGACCACAACATTTTGTCTATTGGAAGCAAATGCTTTACCTGGTTTGATAAAACTGTTACATGGAGAGGTTCATGCAACTGCTTATGAAGCAATACAAACACTTTCTACATTGGTTTTGGAAGAGTTTCCACATAGGGGTGCTCGTTTGTTGCATGAGTCGAATGCAATGAGACCTTTATTGGAGATTTTGAATTGGGGAAGTGAGTCCCTTAAGGCAGAAGCTTTAGGACTTTTGGAGAAGGTTTTTGTGTCAAAGGAAATGGTGGAATACTATGGAATGACGGCTAGATCGCGTCTAGTTCATTTAACTGGAACAAATATATATGGAGATGGTCATCTTCGAAGGAAAGCTGCTAAGGTTTTATCATTGCTTGAACGTTATTCTAAGTCTTCATCATCTGCAATCTCTGGAGTTTTGGAGTGA 1353 0.4109 SLSALVKLAGSHANKGIIASSGGVPLILDLMFSPRTWSFITIKCSEILEKLSSSDDGIDFFVDGEGKQLELDSIITNLLVLQQSSNSGHNLRKPTLRALLGICKFETSLVKKAILAANGVSLILPHLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFKPRRLEALIGFLENDDNDNVQMAAAGLLANLPKSERELTNKLIEMGGLDAILSILKTGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVDFLNTGSVTAKAIAAAFIGDLSMSTPKLTVVSKPNGCWFFRSSRVPLCAAHDSVCSVTTTFCLLEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEEFPHRGARLLHESNAMRPLLEILNWGSESLKAEALGLLEKVFVSKEMVEYYGMTARSRLVHLTGTNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLE 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18822g00001 450 SUPERFAMILY ARM repeat 71 438 IPR016024 -
Trme18822g00001 450 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 442 - -
Trme18822g00001 450 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 189 IPR000225 GO:0005515
Trme18822g00001 450 SMART arm_5 353 393 IPR000225 GO:0005515
Trme18822g00001 450 SMART arm_5 236 276 IPR000225 GO:0005515
Trme18822g00001 450 SMART arm_5 149 191 IPR000225 GO:0005515
Trme18822g00001 450 SMART arm_5 309 349 IPR000225 GO:0005515
Trme18822g00001 450 SMART arm_5 107 147 IPR000225 GO:0005515
Trme18822g00001 450 SMART arm_5 193 233 IPR000225 GO:0005515
Trme18822g00001 450 Gene3D - 1 285 IPR011989 -
Trme18822g00001 450 Gene3D - 297 448 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18822g00001 Trme-Chr18822 1 1353 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18822g00001 1 393 U-box Gene Family AT1G68940 24.651 2.28e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18822g00001 - - gmx:100783638 759.599