Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme188101g00001 ATGGATGTTGGTGTTGTACCAGAATCAACAATGAGAGATGTCTCAATGAACTATTCAAGAACTTCAAAAGGAACAATTGACCTATTTTCAGGTCCTCCTATTCAAATGCCTTCTCATTTCTCACCAATGGACAGAGAAGCCAGAGTCCTAAGGTATAGAGAGAAAAAGAAAACAAGAAAATTTGAGAAGACAATTAGGTATGCCTCAAGGAAAGCCTATGCAGAGACTCGACCGCGTATAAAAGGTCGATTCGCGAAGCGAACAGATGTAGATGCTGAAGTTGATCAAATGTTTTCCACATCACTAATTACAGAAGTTGGATATGGCATTGTTCCCTCATTCTAA 345 0.3913 MDVGVVPESTMRDVSMNYSRTSKGTIDLFSGPPIQMPSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVDAEVDQMFSTSLITEVGYGIVPSF 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme188101g00001 114 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 101 IPR045281 GO:0009909
Trme188101g00001 114 ProSiteProfiles CCT domain profile. 45 87 IPR010402 GO:0005515
Trme188101g00001 114 Pfam CCT motif 45 87 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme188101g00001 Trme-Chr188101 80 424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme188101g00001 1 114 C2C2-CO-like Transcription Factor Family AT3G02380 69.298 2.77e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme188101g00001 CCT 1.4e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme188101g00001 - K12135 gmx:100301885 205.297