Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme187g00001 CTGTTTGAACAGTTTCGAAGGGTTGCCAACATATATTTCCTTTTGGCTGCTTGTCTCTCTGCATCTCCAATTTCACCTTTCAGCGCGTTGAGCATGATTGCTCCTTTGGTTTTTGTTGTGGGGCTTAGTATGGCAAAGGAAGCATTGGAGGATTCACGCAGGTTTCTCCAGGACGTTAAGGTTAATCGCCGGAAAGCTAGTCTACATAGAGGCAATGGTGTTTTTGGTCTTAGGTCATGGCAGAAAATTATGGTTGGGGATATAGTAAAAGTAGAAAAGGACCAATTTTTTCCAGCTGACTTGCTTCTCTTGTCTTCAAGTTATGAGGATGGGATATGCTATGTAGAGACCATGAATTTAGATGGAGAGACAAACTTGAAGTTGAAAAGATCTTTGGAGGCTACCCTGTCCCTTGATAATGATGGAGCTTTTAAGGATTTCACCGGAACAATACGTTGTGAAGACCCGAATCCAAATCTTTACACTTTTGTTGGGAACTTTGAGTATGATCGTCAGGTTTATCCTCTTGATCCTGGTCATATTCTCCTCCGAGATTCAAAGCTTAGGAACACAGAATATGTCTATGGGGTGGTCATTTTCACCGGCCACGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGAAGCACAATAGAGAAAAAGATGGATCATATCATATACACTCTTTTCACTGTCCTTATATTGATATCCTTTATTAGTTCAATAGGATTTGTTGTTAAGACTAAGTACCAGGCCACAGAGTGGTGGTATTTACGGCCCGACGATATTGAATATCAGTATGATCCTAGGAAAATTGGATTGGCTGGAATGAGCCATCTGATCACTGCCCTTATTCTTTATGGATATTTGATACCCATCTCTCTTTATGTTTCAATTGAGATTGTTAAGGTATTACAGGCCACCTTCATTAACCAAGACCTTCAAATGTATGATGAAGAAACTGGGACTCCTGCTGAAGCACGAACATCCAATCTGAATGAAGAGTTGGGTCAGGTAGACACCATCCTCTCTGATAAAACTGGCACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTTCCTATGGTGTACGTTCCAGTGAAGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATCTTGATGAGGAAGATTCGGATCTCTCTAATTTCCCCATGCAAAAGAAGGGTAATGCGCCGTGGGAAAATGTTAGAAGAGATGAAGAAATTGAACTTGAGACAGTTGTTACTTCTAAGGGTGGTGAGGATCGAAGGCCTTCCATAAAGGGATTTGGTTTTGCTGACAGCCGCCTCATGGATGGCAATTGGTCGAAAGATCCCAATGCTGCTGTCATTCTGTTGTTTTTCCGGATACTAGCAGTCTGCCATACTGCCATTCCCGAGCTTAATGAGGAGAGCGACAGTTGTACTTATGAAGCTGAATCACCTGATGAAGGGGCTTTTCTTGTAGCTGCTAGAGAATTTGGTTTTGAATTTTATAGAAGAACCCAATCAACTGTCGTTGTACGCGAAAGACTTTCTGCTTCAGGACAAGTGGTTGAAAGAGAGTATAAAATATTGAATCTGCTGGAGTTTACTAGCAAAAGAAAGCGTATGTCGGTGATTGTGCGTGATGAGGAGGGAAACATTATTCTTTTATGCAAAGGAGCTGACAGTATCATATTTGATCGGTTATCTAAGAATGGAAAGAAGTATTTGGATGCCACTTCTAGGCATTTGAATGAATATGGAGAAGTAGGTTTGAGAACACTAGCCCTGGCTTACAGAAATCTTGATGAACAAGAGTACTCTGATTGGAACAACGAGTTTCAGAAAGCCAAGACAACTGTTGGGCCTGTCAGAGATGCAATGCTTGAGAAGGTATCAGATAGTATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCTGTGGAAGACAAGCTGCAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTCTTGACAGGGGATAAGATGGAAACTGCAATCAATATTGGATTTGCATGTAGTTTGCTTCGACAGGGCATGAAGCAAATCTGTATCTCTACTGCAAATTCAGATTCAGTAATCAATGATGGGAGAGAGGTAATCAAAGACGACATCTTGACTCAAATCACCAATGCCTCACAATTGATGAAGCTGGAGAAGGACCCACATGCTGCGTTTGCATTAATTATTGATGGAAAAACTCTAACATATGCTCTAGAAGATGATGTCAAACACCAATTTTTGGCATTAGCTGTTGAGTGTGCATCTGTCATTTGCTGCCGCGTGTCTCCCAAGCAAAAGGCTTTGGTAACAAGATTAGTGAAAGAAGGAACTGGGAAGACCACTTTAGCAATAGGTGATGGTGCAAATGATGTCGGCATGATTCAAGAGGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTTTCCATTGCTCAATTTCGATTTTTGGAGCGGCTTCTGGTAGTCCATGGACACTGGTGTTACAAGCGAATTGCACAAATGATATGTTATTTCTTCTACAAAAATATAGCATTTGGCCTCACAATATTCTATTTTGAGGCTTTTGCGGGCTTCTCTGGTCAATCGGTTTATGATGATTGGTACATGATATTGTTTAATGTCGTTCTTACATCGTTGCCAGTCATTTCACTTGGAGTTTTTGAACAAGATGTGCCATCTGAAGTTTGCTTACAGTTTCCTGCACTATATCAGCAAGGACCCAAAAATTTGTTCTTTGACTGGTATAGAATATTGGGATGGATGGGGAATGGTCTGTACTCTTCCCTTGTCATCTTCTTCCTTGTCATCATCATCTTCTATGACCAAGCATTCCGTCTGAATGGCCAGACTGCAGACATGGCTGCTGTTGGTACCACAATGTTCACCTCCATCATCTGGGCTGTCAACTGCCAGATTGCCTTGACAATGAGCCATTTTACATGGATACAACACCTCTTTGTGTGGGGCAGCATAGCCAGTTGGTACCTCTTTCTCTTATTATATGGCATGCTTTCTCCAGTATATTCCAAGACTGCGTACCAAATATTGGTTGAAGTGCTTGCTCCTGCTCCTATTTATTGGGCAGCAACCATTCTAGTAACTGTTACATGCAATCTTCCTTATCTTGCCCACATATCGTTCCAAAGGTGTTTTAATCCCATGGATCATCACATTATCCAAGAGATCAAGTACTACAAGAAGGACATTGAAGATCAACACATGTGGACGAGGGAGCGGTCTAAAGCAAGACAAGAAACAAAGATTGGTTTCACAGCAAGAGTAGAAGCAAAGATCAGGCAGCTGAAAGGGAGGCTGCAGAAGAAGCAATCTATAACGGGGGTTTCGTCCCCATTATGA 3444 0.4196 MFEQFRRVANIYFLLAACLSASPISPFSALSMIAPLVFVVGLSMAKEALEDSRRFLQDVKVNRRKASLHRGNGVFGLRSWQKIMVGDIVKVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKLKRSLEATLSLDNDGAFKDFTGTIRCEDPNPNLYTFVGNFEYDRQVYPLDPGHILLRDSKLRNTEYVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDHIIYTLFTVLILISFISSIGFVVKTKYQATEWWYLRPDDIEYQYDPRKIGLAGMSHLITALILYGYLIPISLYVSIEIVKVLQATFINQDLQMYDEETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTSYGVRSSEVELAAAKQMASDLDEEDSDLSNFPMQKKGNAPWENVRRDEEIELETVVTSKGGEDRRPSIKGFGFADSRLMDGNWSKDPNAAVILLFFRILAVCHTAIPELNEESDSCTYEAESPDEGAFLVAAREFGFEFYRRTQSTVVVRERLSASGQVVEREYKILNLLEFTSKRKRMSVIVRDEEGNIILLCKGADSIIFDRLSKNGKKYLDATSRHLNEYGEVGLRTLALAYRNLDEQEYSDWNNEFQKAKTTVGPVRDAMLEKVSDSMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICISTANSDSVINDGREVIKDDILTQITNASQLMKLEKDPHAAFALIIDGKTLTYALEDDVKHQFLALAVECASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLVIFFLVIIIFYDQAFRLNGQTADMAAVGTTMFTSIIWAVNCQIALTMSHFTWIQHLFVWGSIASWYLFLLLYGMLSPVYSKTAYQILVEVLAPAPIYWAATILVTVTCNLPYLAHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRQLKGRLQKKQSITGVSSPL 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme187g00001 1147 CDD P-type_ATPase_APLT_Dnf-like 2 964 - -
Trme187g00001 1147 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 1076 IPR023298 -
Trme187g00001 1147 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1101 - -
Trme187g00001 1147 SUPERFAMILY HAD-like 334 848 IPR036412 -
Trme187g00001 1147 Gene3D - 648 844 IPR023214 -
Trme187g00001 1147 NCBIfam HAD-IC family P-type ATPase 773 885 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme187g00001 1147 Gene3D - 356 379 IPR023299 GO:0000166
Trme187g00001 1147 Pfam Phospholipid-translocating ATPase N-terminal 1 33 IPR032631 -
Trme187g00001 1147 Gene3D - 343 355 IPR023214 -
Trme187g00001 1147 PRINTS P-type cation-transporting ATPase superfamily signature 804 823 - -
Trme187g00001 1147 PRINTS P-type cation-transporting ATPase superfamily signature 346 360 - -
Trme187g00001 1147 NCBIfam phospholipid-translocating P-type ATPase 1 1090 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trme187g00001 1147 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Trme187g00001 1147 ProSitePatterns E1-E2 ATPases phosphorylation site. 348 354 IPR018303 -
Trme187g00001 1147 SFLD p-type atpase 328 855 IPR044492 -
Trme187g00001 1147 Gene3D - 514 647 IPR023299 GO:0000166
Trme187g00001 1147 SFLD Haloacid Dehalogenase 328 855 - -
Trme187g00001 1147 FunFam Phospholipid-transporting ATPase 647 844 - -
Trme187g00001 1147 Pfam Phospholipid-translocating P-type ATPase C-terminal 832 1082 IPR032630 -
Trme187g00001 1147 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 446 609 IPR023299 GO:0000166
Trme187g00001 1147 Pfam Cation transport ATPase (P-type) 469 574 - -
Trme187g00001 1147 SUPERFAMILY Calcium ATPase, transduction domain A 70 210 IPR008250 -
Trme187g00001 1147 FunFam Phospholipid-transporting ATPase 42 212 - -
Trme187g00001 1147 FunFam Phospholipid-transporting ATPase 514 645 - -
Trme187g00001 1147 Coils Coil 372 392 - -
Trme187g00001 1147 Gene3D - 36 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme187g00001 Trme-Chr187 1 5373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme187g00001 1 1145 Primary Pumps ATPases AT1G54280 75.196 0.0 1816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme187g00001 K01530 - gmx:100778710 2051.94