Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme187985g00001 ATGGTGGCGCAGATGCAAATCTTCGTAAAGACCCTGACTGGAAAGATAATCCTCTTGAGGGTTAAGAGTTCAGACACAATAGTCGATGTGAAGAAGAAGATTTTTGACAAGGGGGGCTACGAAGTGCACAATCAACGTCTGATCTTTGGTGGTTACCAACTAGAAGACACACGGACCGTTGCCAATTACAACATCCAAGACAACACAACCATCGACCTTGTGCTCCGCCTCACTGGGAACTAG 243 0.465 MVAQMQIFVKTLTGKIILLRVKSSDTIVDVKKKIFDKGGYEVHNQRLIFGGYQLEDTRTVANYNIQDNTTIDLVLRLTGN 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme187985g00001 80 SUPERFAMILY Ubiquitin-like 5 80 IPR029071 -
Trme187985g00001 80 SMART ubq_7 5 76 IPR000626 GO:0005515
Trme187985g00001 80 Gene3D - 2 80 - -
Trme187985g00001 80 FunFam Polyubiquitin-C 5 80 - -
Trme187985g00001 80 ProSiteProfiles Ubiquitin domain profile. 5 80 IPR000626 GO:0005515
Trme187985g00001 80 PRINTS Ubiquitin signature 57 78 IPR019956 -
Trme187985g00001 80 PRINTS Ubiquitin signature 15 35 IPR019956 -
Trme187985g00001 80 PRINTS Ubiquitin signature 36 56 IPR019956 -
Trme187985g00001 80 Pfam Ubiquitin family 7 77 IPR000626 GO:0005515
Trme187985g00001 80 PANTHER UBIQUITIN 5 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme187985g00001 Trme-Chr187985 134 376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme187985g00001 5 79 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 66.667 9.03e-28 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme187985g00001 - K08770 sspl:121801802 95.1301