LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme1878g00001	ATGAGGTCATTGATGGGGACCGAGCTTATGAGGATATGTGTTAAAGAAGATAATGATGATTTTCCGTCAGTTCCACCGGGTTTTGAGTCATATACATCTTTCGCACTGAAAAGAGTAGAAGCGAATGAGAAACACAATGATAAAAATTTGACCAGTTCCTCTACAAGTGCTTCTGAATCGCAGTCAACTCAGGTCGGAAATGGTGTTCAAATTAGTGATACTGCAAAGGTTTCTAGATCCCTTCGACGAAGACCGTGGATTAACCATGGACAGTGTGAGAACGGTTCAGAGGAAGACTGTGATTGTGAGCGGCATGATCAAAATTTCTCCTCGAGACCCTGTCTTCCTAAAGGAGTCATCAGAGGATGTCCAGATTGCCCTAATTGCCAAAAGGTCATTGCCAAATGGCGACCAGAAGAGGCTCTTAGGCCACATCTCGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAATTTCAAGATACTTTGAAATATATATCGAGTATTCGATCCAGAGCTGAACCATATGGAATTTGTCGTATTGTTCCCCCGCAATCATGGAAACCCCCTTGTCCTCTGAAGGAAAAAAGTATATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAAAGGATTGACAAACTTCAGAATCGTAATTCAGGGACAAAGAAGTCGAGGATTCAAAATAATTTGAAAAGGAAAAGGAGACGATGCACAAGAATGGGAGTGGATAATGGCACTGAATCAGATCCTAATGCAGTATTTTGTGAAGTTGAAAGGTTTGGGTTTGAACCTGGACCAGAATTTACCTTGGAAACATTTAAGAGATATGCAGACGAGTTTAAGGTCAAATACTTCAGAAATGATAGTTTATCTCATCCAAGTGCTAATACAACAATTGTAAGTGGTACCTCGGAGCCTTCTGTGGAGAACATTGAAGGTGAATACTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTAGAAACTGGGGTTTTTGGGAGTGGTTTTCCTATCAACTCTAGTCAAGTTTCTGATTCAAATGAACAGTACATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGTTACCTGGATCTCTGCTCTCTTATGAAACCAGTGATATATCTGGTGTTGTAGTGCCATGGTTGTATTTAGGAATGTGCTTTTCGTCATTTTGTTGG	1203	0.4115	MRSLMGTELMRICVKEDNDDFPSVPPGFESYTSFALKRVEANEKHNDKNLTSSSTSASESQSTQVGNGVQISDTAKVSRSLRRRPWINHGQCENGSEEDCDCERHDQNFSSRPCLPKGVIRGCPDCPNCQKVIAKWRPEEALRPHLEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPQSWKPPCPLKEKSIWEGSKFATRVQRIDKLQNRNSGTKKSRIQNNLKRKRRRCTRMGVDNGTESDPNAVFCEVERFGFEPGPEFTLETFKRYADEFKVKYFRNDSLSHPSANTTIVSGTSEPSVENIEGEYWRMVESPTEEIEVLYGADLETGVFGSGFPINSSQVSDSNEQYIKSGWNLNNFARLPGSLLSYETSDISGVVVPWLYLGMCFSSFCW	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme1878g00001	401	Gene3D	Cupin	134	401	-	-
	Trme1878g00001	401	ProSiteProfiles	JmjN domain profile.	149	190	IPR003349	-
	Trme1878g00001	401	PANTHER	LYSINE-SPECIFIC DEMETHYLASE	144	401	-	-
	Trme1878g00001	401	SMART	JmjN_1	148	189	IPR003349	-
	Trme1878g00001	401	Pfam	jmjN domain	150	183	IPR003349	-
	Trme1878g00001	401	MobiDBLite	consensus disorder prediction	48	74	-	-
	Trme1878g00001	401	ProSiteProfiles	JmjC domain profile.	359	401	IPR003347	-
	Trme1878g00001	401	MobiDBLite	consensus disorder prediction	42	74	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme1878g00001	Trme-Chr1878	378	2287	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme1878g00001	5	401	JUMONJI Transcription Factor Family	AT1G08620	59.569	3.06e-137	420

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Trme1878g00001		JmjN	8.7e-18	CL0029

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme1878g00001	K11446		-	gmx:100800271	697.197