Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme187794g00001 ATGTCAAGAGGAAGCAATTCCTATGTCGGGAAACTGAGATCAAATTTCCTTGGAACGAAGTTCACAGTCTATGATGGTCAGCCACCTCATGCCGGGGCAAAGATTGCAAAAAGTCACTCCACTAGGTTGGTGAATCTAAAGCAGGTTTCACCCAAGGTCCCAACAGGAAACTATCCAGTTGCTCACATCTCATATGAATTGAATGTTCTAGGCTCTAG 218 0.445 MSRGSNSYVGKLRSNFLGTKFTVYDGQPPHAGAKIAKSHSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGS 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme187794g00001 72 Pfam Tub family 1 71 IPR000007 -
Trme187794g00001 72 SUPERFAMILY Tubby C-terminal domain-like 1 71 IPR025659 -
Trme187794g00001 72 Gene3D Tubby Protein; Chain A 1 72 IPR025659 -
Trme187794g00001 72 PANTHER TUBBY-RELATED 2 71 - -
Trme187794g00001 72 PRINTS Tubby superfamily signature 8 32 IPR000007 -
Trme187794g00001 72 PRINTS Tubby superfamily signature 57 72 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme187794g00001 Trme-Chr187794 55 374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme187794g00001 1 72 TUB Transcription Factor Family AT2G47900 72.222 9.32e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trme187794g00001 Tub 1.3e-21 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme187794g00001 K19600 - lja:Lj0g3v0087609.1 142.124