Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme187698g00001 CTTGGTGGACACAAAGCAAGTCACAGGAAAAACTCCACCGCCGGAACCGCTGGCGGTGATGAACAATCAACTTCATCAGCCGCCACCACAAGTTCTGCAAACACCGCCGTTGGAAACGGTGGTGTTAGATCTCATGAGTGTTCGATTTGTCATAAGTCGTTTCCGACCGGACAGGCTTTGGGGGGACACAAACGTCGTCACTATGAAGGTAGTGTCRGCGGWGGCGGYGGTGGTGGTGGTGCTGCAACTGTATCTGAAGTGGGATCCACACATASTCGTGATTTCGATCTGAATATCCCGGCTTTTCCGGAGTTTGGTAACAAGGTGGGAGAAGATGAAGTTGAAAGTCCACATCCTGTTATGATGAAGAAGAAGCCTCGTGTTTTCGTG 390 0.5026 LGGHKASHRKNSTAGTAGGDEQSTSSAATTSSANTAVGNGGVRSHECSICHKSFPTGQALGGHKRRHYEGSVXGGGGGGGAATVSEVGSTHXRDFDLNIPAFPEFGNKVGEDEVESPHPVMMKKKPRVFV 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme187698g00001 130 SUPERFAMILY beta-beta-alpha zinc fingers 43 69 IPR036236 -
Trme187698g00001 130 MobiDBLite consensus disorder prediction 9 41 - -
Trme187698g00001 130 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 67 IPR013087 -
Trme187698g00001 130 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 103 IPR044653 GO:0003700
Trme187698g00001 130 MobiDBLite consensus disorder prediction 1 89 - -
Trme187698g00001 130 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Trme187698g00001 130 Pfam C2H2-type zinc finger 45 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme187698g00001 Trme-Chr187698 68 457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme187698g00001 1 119 C2H2 Transcription Factor Family AT5G04340 59.200 7.36e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme187698g00001 zf-C2H2_6 1.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme187698g00001 - - gmx:100795384 151.369