Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme187547g00001 ATGGGGGGTGGAAATAGAAATGGGATAGGTGATTTAGTGATGGTGAATGATGAGAAGGGTGCGTTTGGTTTGCAGGATTTGATGAAAGCTGCTGCTGAGGTATTGGGGAATGGTGGATTGGGTTCGGCTTATAAAGCCGCTATGGCGAGCGGGTTGAGTGTGGTTGTGAAAAGGATGAGGGAGATGAATAAAATTGGGAAAGATGTGTTTGATGCTGAAATGAGACAGTTTGGGAGGATTAGACATCCTAATATTTTGACTCCTTTAGCTTATCATTATAGGAGAGAGGAAAAGCTTTTCGTTACCGAGTATATGC 316 0.4304 MGGGNRNGIGDLVMVNDEKGAFGLQDLMKAAAEVLGNGGLGSAYKAAMASGLSVVVKRMREMNKIGKDVFDAEMRQFGRIRHPNILTPLAYHYRREEKLFVTEYM 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme187547g00001 105 Gene3D Phosphorylase Kinase; domain 1 5 104 - -
Trme187547g00001 105 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 105 IPR046959 -
Trme187547g00001 105 Pfam Protein tyrosine and serine/threonine kinase 33 105 IPR001245 GO:0004672|GO:0006468
Trme187547g00001 105 SUPERFAMILY Protein kinase-like (PK-like) 33 105 IPR011009 -
Trme187547g00001 105 ProSiteProfiles Protein kinase domain profile. 29 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme187547g00001 Trme-Chr187547 1 316 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme187547g00001 11 105 Receptor kinase-like Gene Family AT3G42880 75.789 1.52e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme187547g00001 PK_Tyr_Ser-Thr 1.2e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme187547g00001 - - gmx:100816925 181.415