Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18735g00001 ATGTGTGATAAAGCTGTTTATCTAACTGATGTTTCATTTGTAGAGTTACTTTTGTATAACACCGCAAAACCTCGTATTGGATCAAAAAATGATCAAGCTGTTGCTTTGCGCATCTCTGGAGACAAAGGAGCTTTTTACAATAGCGAGTTCTATGGATATCAAGACACGCTTTATGATCACCAAGGACTTCATTACTTCAAAGATTGCAAAATTCAAGGCACTGTTGATTTCATCTTTGGAAATGGGAAGTCGCTTTACGAGGGCTGCACTATAAATTCCATAGCCGAAAATTCGGGCTTTATCACAGCTCAAAAGCGCTCAAGTTTGACAATGGATACTGGGTTTTCAATCTTAAATAGCAGAGTAATCGGAAGTGGTCAAGTCTATTTGGGAAGACCATGGGCAGATTATTCGAGAGTAATTTTCTCTTATACTTACATGGACACCCTGGTTCTCCCACAAGGATGGATCGACACTATGGATGGACACCACCATAACTTGACCGTATTCTATGCAGAATATAAGTGCAGTGGACCAGGATCCAGTTTTGCTGGGAGACCTGCATGGATACGGAGATTGTCAGACGAAGATGCCAAAGAATTTATCGGAGTCCATTTCATACGTGGGGAGACTTGGCTCCAGGGACCAAGCCATATATAG 660 0.4152 MCDKAVYLTDVSFVELLLYNTAKPRIGSKNDQAVALRISGDKGAFYNSEFYGYQDTLYDHQGLHYFKDCKIQGTVDFIFGNGKSLYEGCTINSIAENSGFITAQKRSSLTMDTGFSILNSRVIGSGQVYLGRPWADYSRVIFSYTYMDTLVLPQGWIDTMDGHHHNLTVFYAEYKCSGPGSSFAGRPAWIRRLSDEDAKEFIGVHFIRGETWLQGPSHI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18735g00001 219 ProSitePatterns Pectinesterase signature 2. 71 80 IPR033131 -
Trme18735g00001 219 Pfam Pectinesterase 25 209 IPR000070 GO:0030599|GO:0042545
Trme18735g00001 219 SUPERFAMILY Pectin lyase-like 11 214 IPR011050 -
Trme18735g00001 219 Gene3D - 4 217 IPR012334 -
Trme18735g00001 219 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 15 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18735g00001 Trme-Chr18735 349 1308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18735g00001 24 214 Carbohydrate Esterase AT1G05310 44.724 1.95e-57 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18735g00001 K01051 - tpra:123885915 339.732