Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme187228g00001 ATGATGATAGCGGCTGGGGCAGCAAGAGGAATAAATTATCTGCACCATGAAGCAAAGCCTACTGTTATATACAGAGATGTGAAAACATCTAATATACTATTGGATGAAGGATTCCATCCAAAGCTTTCTGATTTCGGGCTTGCGAAATTCGGTCCGACTGGAGACCAATCATATGTTGCTACTAGAGTGATGGGAACACATGGTTATTGTGCACCTGAGTATGCAACTACTGGAAAATTAACAATGAGATCTGATATATATAGTTTTGGAGTTGTGTTATTGGAGCTAATTACCGGACGTAGAGCTTATGACGATACTCGTGAGCATGACAAGCATCTTGTTGATTGG 348 0.4052 MMIAAGAARGINYLHHEAKPTVIYRDVKTSNILLDEGFHPKLSDFGLAKFGPTGDQSYVATRVMGTHGYCAPEYATTGKLTMRSDIYSFGVVLLELITGRRAYDDTREHDKHLVDW 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme187228g00001 116 Gene3D Transferase(Phosphotransferase) domain 1 1 116 - -
Trme187228g00001 116 SUPERFAMILY Protein kinase-like (PK-like) 2 110 IPR011009 -
Trme187228g00001 116 Pfam Protein kinase domain 3 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme187228g00001 116 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672|GO:0006468
Trme187228g00001 116 PANTHER OS07G0668900 PROTEIN 1 116 - -
Trme187228g00001 116 ProSiteProfiles Protein kinase domain profile. 1 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme187228g00001 Trme-Chr187228 89 436 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme187228g00001 1 116 Glycoside Hydrolase AT3G07070 65.812 5.01e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trme187228g00001 Pkinase 6.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme187228g00001 K13430 - gmx:100809298 213.772