Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18721g00001 GATATTGATTTTGAATCTGCGGAAGCCAAAAAAAATGTCAGTGGATCATCTACAAAGAGATCTCGTGCTGCTGAGGTCCATAATCTCTCAGAAAGGAGGCGCCGTGACCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGATCTAATAAATCTGACAAAGCTTCTATGCTGGATGAAGCAATTGAATACTTGAAGTCACTTCAGTTACAAGTGCAGATGATGTCCATGGGATGCGGCATGGTACCGATGATGTTTCCTGGAATCCAGCAGTATATGCCAACAATTGGAATGGGGATGGG 311 0.4277 DIDFESAEAKKNVSGSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPTIGMGMG 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18721g00001 104 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 9 104 IPR031066 -
Trme18721g00001 104 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 22 71 IPR011598 GO:0046983
Trme18721g00001 104 MobiDBLite consensus disorder prediction 1 33 - -
Trme18721g00001 104 Pfam Helix-loop-helix DNA-binding domain 26 72 IPR011598 GO:0046983
Trme18721g00001 104 Gene3D - 17 80 IPR036638 GO:0046983
Trme18721g00001 104 SMART finulus 28 77 IPR011598 GO:0046983
Trme18721g00001 104 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 88 IPR036638 GO:0046983
Trme18721g00001 104 CDD bHLH_AtPIF_like 22 85 IPR047265 -
Trme18721g00001 104 Coils Coil 28 48 - -
Trme18721g00001 104 FunFam Basic helix-loop-helix transcription factor 17 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18721g00001 Trme-Chr18721 1 1032 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18721g00001 1 95 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 65.049 1.87e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme18721g00001 HLH 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18721g00001 - - tpra:123888958 198.364