Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme187194g00001 ATGCCAGGTACCGAACAAACTTTCCGATTAAATTGGGCTTCATTCGGTATCGGTGAACGCCGCCCTGATGCCGGTCCCGATCATTCGATTTTCGTCGGAGATCTTGCTCCTGATGTAACGGATTATCTTTTGCAAGAGACTTTTAGGACTCATTATAGTTCTGTTCGTGGTGCGAAAGTTGTTACGGATCCTAATACTGGTAGGAGTAAGGGTTATGGTTTTGTGAAATTTGCTGATGAGAGTGAACGGAATCGCGCTATGTCGGAGATGAATGGTGTTTATTGTTCTACTAGACCGATGAGGATTAGTGCTGCTACGCC 320 0.4531 MPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYSSVRGAKVVTDPNTGRSKGYGFVKFADESERNRAMSEMNGVYCSTRPMRISAATP 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme187194g00001 107 FunFam Polyadenylate-binding protein RBP47B 16 107 - -
Trme187194g00001 107 SMART rrm1_1 29 103 IPR000504 GO:0003723
Trme187194g00001 107 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 95 IPR000504 GO:0003723
Trme187194g00001 107 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 107 - -
Trme187194g00001 107 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 107 IPR000504 GO:0003723
Trme187194g00001 107 SUPERFAMILY RNA-binding domain, RBD 14 107 IPR035979 GO:0003676
Trme187194g00001 107 Gene3D - 27 104 IPR012677 -
Trme187194g00001 107 CDD RRM2_SECp43_like 27 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme187194g00001 Trme-Chr187194 1 320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme187194g00001 29 105 Eukaryotic Initiation Factors Gene Family AT4G34110 37.662 3.71e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme187194g00001 - - tpra:123894020 223.787