Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme187170g00001 ATGACTGGCGATGGAGTGAATGATGCACCTGCTCTCAAGAAGGCAGATATTGGTATAGCTGTTGCAGATGCTACTGATGCTGCTCGTAGTGCATCCGATATTGTTTTAACAGAACCTGGCCTTAGTGTTATTATAAGTGCTGTTTTGACCAGCCGAGCTATCTTTCAGAGAATGAAAAACTACACAATTTATGCTGTCTCAATTACAATTCGTATTGTG 219 0.411 MTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIV 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme187170g00001 73 Pfam haloacid dehalogenase-like hydrolase 3 37 - -
Trme187170g00001 73 PANTHER CALCIUM-TRANSPORTING ATPASE 1 73 - -
Trme187170g00001 73 PRINTS P-type cation-transporting ATPase superfamily signature 25 37 - -
Trme187170g00001 73 PRINTS P-type cation-transporting ATPase superfamily signature 2 21 - -
Trme187170g00001 73 PRINTS H+-transporting ATPase (proton pump) signature 2 18 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme187170g00001 73 PRINTS H+-transporting ATPase (proton pump) signature 33 58 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme187170g00001 73 Gene3D - 1 70 IPR023214 -
Trme187170g00001 73 NCBIfam HAD-IC family P-type ATPase 1 70 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme187170g00001 73 SUPERFAMILY HAD-like 1 70 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme187170g00001 Trme-Chr187170 45 356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme187170g00001 1 73 Primary Pumps ATPases AT3G42640 100.000 3.20e-42 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme187170g00001 K01535 - qsu:111992387 119.783