Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme187137g00001 ATGGATTTCGTTCCTGATGTTTCTGCTATTAGGACTGATCATATTGAAGTTGATAAGGAAACCCTAGACATGCTTACTGCTCTTGGTATGTCCGAGATTCCTGGTGTTGTTCGGGTTGATCCTGTTCCTGTTCAGCAGATCCCGTTTGGAAGGAG 155 0.4452 MDFVPDVSAIRTDHIEVDKETLDMLTALGMSEIPGVVRVDPVPVQQIPFGR 51
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme187137g00001 51 PANTHER 40S RIBOSOMAL PROTEIN S17 1 41 IPR001210 GO:0003735|GO:0005840|GO:0006412
Trme187137g00001 51 Pfam Ribosomal S17 1 39 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme187137g00001 Trme-Chr187137 282 436 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme187137g00001 1 51 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 56.364 4.22e-15 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme187137g00001 K02962 - cpap:110810532 85.8853