Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme187025g00001 TGCAAATTTGGCGTAACTTGTAAATTCCACCATCCTCAACCTGCTGGCACGTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCAACTGTTCCTCTGCCTGAACAGTTTGGAGGAGCTTCCCCAAGTGTGAGAGTGGCTAGACCTCCTGTGTTACCTGGTTCGTATGTACAAGGTGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCTTTTCCTGGATGGAGTCCTTATTCGGCTCCTGTAAGCCCTGTGTTATCTCCTGGCGCGCAACCTGCTGTTGGGGCTACTTCTCTATACGGAGTG 321 0.5047 CKFGVTCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQFGGASPSVRVARPPVLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGV 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme187025g00001 107 ProSiteProfiles Zinc finger C3H1-type profile. 1 14 IPR000571 GO:0046872
Trme187025g00001 107 PANTHER PROTEIN PHOSPHATASE RELATED 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme187025g00001 Trme-Chr187025 55 464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme187025g00001 1 107 C2H2 Transcription Factor Family AT5G18550 47.009 6.82e-26 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme187025g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme187025g00001 - - lja:Lj5g3v1665190.3 216.853