Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1867g00001 ATGGACAATTCAGAGCAGAATCAACAGCAGCAACAACATGTGATGGGAGTTGCGCCAAACGATAGCCAAATGACCTATTCTTCTCACTACCAGACTGTTCCCATGATGGCTTCTGGCACACCTGCTGGAGCTATTCCTACCGCAACGCATCCTCCAGCTACCTTCTCTAATTCCGCCCACCAGTTCGCATACCAGCAAGCACAGCATTTCCACCATCAACAGCAGAATCAACAACAACAGCAGCTTCAAATGTTCTGGGCAAATCAAATGCAAGAGATTGAGCAAACATTCGACTTTAAAAACCATACTCTCCCACTTGCTCGTATAAAGAAAATAATGAAAGCTGACGAAGATGTCCGGATGATTTCGGCAGAAGCTCCAGTCGTATTTGCAAAAGCATGTGAAATGTTCATATTAGAGTTGACTTTGCGATCTTGGATCCACACAGAAGAGAACAAGAGAAGAACACTACAAAAGAATGATGTAGCAGCTGCTATTGCAAGAAATGATGTTTTTGATTTCTTGGTTGATATCATTCCAAGAGATGAATTGAAAGAAGAGGGGCTCGGAATCGCAAAGGGTACTATTCCAATAATTGGCGCTCCAGCTGATATGCCATATTATTTTGTCCCACCGCAGCATCATTTAAGCCCTACAGGGATGATCATGGGAAACCCAGTTGATCAAGCAGCACTGTATTCTAACCAGCAGCCTCGACCTCCTATGGCTTTCATGCCCTGGCCAAATGCACACCCCCAGCAACAGCAACCACCGCAACAGCAACAGACAGACTCTTAA 798 0.4486 MDNSEQNQQQQQHVMGVAPNDSQMTYSSHYQTVPMMASGTPAGAIPTATHPPATFSNSAHQFAYQQAQHFHHQQQNQQQQQLQMFWANQMQEIEQTFDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDVAAAIARNDVFDFLVDIIPRDELKEEGLGIAKGTIPIIGAPADMPYYFVPPQHHLSPTGMIMGNPVDQAALYSNQQPRPPMAFMPWPNAHPQQQQPPQQQQTDS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1867g00001 265 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 59 251 - -
Trme1867g00001 265 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982
Trme1867g00001 265 MobiDBLite consensus disorder prediction 237 265 - -
Trme1867g00001 265 MobiDBLite consensus disorder prediction 1 23 - -
Trme1867g00001 265 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
Trme1867g00001 265 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Trme1867g00001 265 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 103 166 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1867g00001 Trme-Chr1867 1286 2083 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1867g00001 82 210 CCAAT-HAP5 Transcription Factor Family AT1G56170 86.154 2.09e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trme1867g00001 CBFD_NFYB_HMF 5.8e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1867g00001 K08066 - cave:132175957 365.54