Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18672g00001 ATGAGGGTGATTCTAAGACACCATTCACAAGCACCCATGTTAAGGCTCTACTCATGGTATGACTTGGTTGGTCTTAGTGCGCCAAGGTCATGCTCACATGACATGGTTGTGGGTGGATCAGACACATCCTCCAACACAATTGAGTTTGCACTGGCAGAAATGATGAACAACCCAGAAGTAATGAAGAAAGTTCAAGAGGAGTTAGAAGCTGTGGTTGGAAAAGATAACTCGGTAGAAGAGTCTCACATTCATAAGCTACCCTACTTACATGCAGTGATGAAAGAAACACTTCGTTTGCACCCAGCACTTCCACTTTTAGTCCCTCACTGTCCAAGTGAAACCACCAATGTTGGAGGCTACACAATTCCAAAGGGATCTCGTGTGTTTGTGAACGTTTGGGCTATTCATAGAGACCCTTCCATTTGGGAGAAACCACTAGAATTTGATCCTACAAGGTTCTTGGATGGTAAATGGGATTACAGTGGAAATGACTTCAATTATTTCCCCTTTGGTTCTGGAAGAAGGATTTGTGCTGGAATAGCAATGGCTGAGAGGACTGTTTTGTACTTTATAGCTACCCTTGTGCACTTGTTTGACTGGACTATACCACAAGGAGAAAAGTTGGAG 627 0.4338 MRVILRHHSQAPMLRLYSWYDLVGLSAPRSCSHDMVVGGSDTSSNTIEFALAEMMNNPEVMKKVQEELEAVVGKDNSVEESHIHKLPYLHAVMKETLRLHPALPLLVPHCPSETTNVGGYTIPKGSRVFVNVWAIHRDPSIWEKPLEFDPTRFLDGKWDYSGNDFNYFPFGSGRRICAGIAMAERTVLYFIATLVHLFDWTIPQGEKLE 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18672g00001 209 SUPERFAMILY Cytochrome P450 30 207 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme18672g00001 209 Pfam Cytochrome P450 31 207 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme18672g00001 209 PANTHER OS08G0547900 PROTEIN 31 209 - -
Trme18672g00001 209 Gene3D Cytochrome P450 29 208 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme18672g00001 209 PRINTS P450 superfamily signature 168 177 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme18672g00001 209 PRINTS P450 superfamily signature 91 102 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme18672g00001 209 PRINTS P450 superfamily signature 38 55 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme18672g00001 209 PRINTS P450 superfamily signature 177 188 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme18672g00001 209 PRINTS E-class P450 group I signature 27 44 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme18672g00001 209 PRINTS E-class P450 group I signature 177 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme18672g00001 209 PRINTS E-class P450 group I signature 90 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme18672g00001 209 PRINTS E-class P450 group I signature 131 155 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme18672g00001 209 PRINTS E-class P450 group I signature 167 177 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme18672g00001 209 PRINTS E-class P450 group I signature 47 73 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme18672g00001 209 FunFam Predicted protein 36 209 - -
Trme18672g00001 209 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 170 179 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18672g00001 Trme-Chr18672 41 1366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18672g00001 29 209 Cytochrome P450 AT4G12330 67.956 1.78e-93 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18672g00001 - - vvo:131637263 340.502