Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18671g00001 ATGCATTCAGGAAGACAACCTCAAAAATTGATTAACAGTGAACATAATCAAATGAAATTGGATGAGCTACCACTATATGATTTTGAAAAGCTTGAAACCGCTACAAACAGCTTTCACTTTGGTAATATGCTAGGGAAAGGAGGTTTTGGTCCTGTATACAAGGGAATAATGGAAGATGGACAAGAAATTGCTGTAAAAAGATTGTCAAAAGCATCAGGACAAGGAATAGAAGAATTCATGAACGAAGTAGTAGTGATTTCTAAACTTCAACATCGCAATCTTGTACGACTTCATGGTTGTTGTGTTGAAAGGGGCGAGCAAATGTTGGTTTATGAGTTCATGCCAAATAAGAGTTTGGATGCCCTTCTTTTTGGTTAG 378 0.3677 MHSGRQPQKLINSEHNQMKLDELPLYDFEKLETATNSFHFGNMLGKGGFGPVYKGIMEDGQEIAVKRLSKASGQGIEEFMNEVVVISKLQHRNLVRLHGCCVERGEQMLVYEFMPNKSLDALLFG 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18671g00001 125 Pfam Protein tyrosine and serine/threonine kinase 39 123 IPR001245 GO:0004672|GO:0006468
Trme18671g00001 125 ProSiteProfiles Protein kinase domain profile. 38 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18671g00001 125 Gene3D Phosphorylase Kinase; domain 1 11 113 - -
Trme18671g00001 125 SUPERFAMILY Protein kinase-like (PK-like) 11 124 IPR011009 -
Trme18671g00001 125 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 124 - -
Trme18671g00001 125 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 3 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18671g00001 Trme-Chr18671 139 602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18671g00001 13 124 Receptor kinase-like Gene Family AT4G23190 59.821 3.18e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme18671g00001 PK_Tyr_Ser-Thr 1.6e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18671g00001 - - ccaj:109790907 205.297