Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18666g00001 TTGGTTTTGGGTGTGGTGGTGGTGACTTTGGTGGTGTTGATAAAGAGGAGGAGATTGAAGAAAGAGAAGGACAATGGGTTTGTTCCTATTTTGAATTTGAAGGTGTTTTCTTACAAGGAGCTTCAATTGGCGACTCGAGGGTTTTCTGAGAAAGTTGGGCATGGTGGGTTTGGGACGGTGTTTAAAGGGGAGTTGAGTGATTCTACGGTTGTTGCGGTGAAGCGTTTGGAGAGGCCGGGAGGTGGGGAGAAAGAGTTTAGGGCCGAGGTTTCAACGATTGGGAACATTCAACATGTTAATCTTATGAGGCTAAGAGGTTTTTGCTCTGAGAATGCGCATCGACTTTTGGTTTATGAGTACATGCCGAATGGTGCCCTTAGCGCTTATCTGCGAAAGGATGGGCCGTGTTTGAGTTGGGATGTTAGGTTCAGTGTGGCGATTGGAACTGCTAAAGGCATAGCATATTTACACGAGGAATGTAGAAGTTGCATTATACATTGTGATATCAAACCTGAAAACATTCTTTTGGATGGTGATTTCACTGCCAAGGTTTCTGATTTTGGATTGGCAAAGCTAATTGGCAGGGACTTCAGTAGGGTGTTGGCAACCATGAGGGGTACTTGGGGATATGTAGCACCGGAGTGGATATCTGGCGTTGAAATTACAACTAAAGCTGATGTTTACAGCTATGGAATGACATTGCTAGAACTCGTAAGCGGTCGCCGGAATGTGGAGGCACCACCTTTGTCTGGTGATAGAAAGAGTGGTTGTGAGACAGAGGAGAAATGGTTCTTTCCTCCGTGGGCAGCACAGCTGATAATCGAGGATAATATGGCTGCTGTGGTTGATAAGAAGCTTGGAAATGTATATAACATTGAGGAGGCCAAAAGAGTTGCGATGGTAGCAGTTTGGTGCATTCAGGATGATGAGGCAATGAGACCTACCATGGGTATGGTGGTGAAAATGTTAGAGGGGTTAGTAGAGGTGGCTCTTCCACCGCCACCTAAGTTGCTACAAGCGTTGGTTTCCGGAGAGTCCTTTCACGGTGTCAAGGCTGATTCGAGCAATGCAGTTTCTACTGTTGGCAGTTCATCTGGTTACGACAACATGGAAGTGTCGGCTGCTGATTCAGAATCATGTATAGGAGATGTTTTTTCACCATTGGATTGCATTGTCAATGTTCGATAA 1188 0.4554 MVLGVVVVTLVVLIKRRRLKKEKDNGFVPILNLKVFSYKELQLATRGFSEKVGHGGFGTVFKGELSDSTVVAVKRLERPGGGEKEFRAEVSTIGNIQHVNLMRLRGFCSENAHRLLVYEYMPNGALSAYLRKDGPCLSWDVRFSVAIGTAKGIAYLHEECRSCIIHCDIKPENILLDGDFTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVEITTKADVYSYGMTLLELVSGRRNVEAPPLSGDRKSGCETEEKWFFPPWAAQLIIEDNMAAVVDKKLGNVYNIEEAKRVAMVAVWCIQDDEAMRPTMGMVVKMLEGLVEVALPPPPKLLQALVSGESFHGVKADSSNAVSTVGSSSGYDNMEVSAADSESCIGDVFSPLDCIVNVR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18666g00001 395 Gene3D Phosphorylase Kinase; domain 1 10 120 - -
Trme18666g00001 395 FunFam S-receptor-like kinase 5 121 332 - -
Trme18666g00001 395 SMART serkin_6 46 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18666g00001 395 PANTHER OS07G0415500 PROTEIN 3 336 - -
Trme18666g00001 395 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Trme18666g00001 395 CDD STKc_IRAK 52 326 - -
Trme18666g00001 395 FunFam Receptor-like protein kinase 4 10 120 - -
Trme18666g00001 395 Pfam Protein kinase domain 49 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18666g00001 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Trme18666g00001 395 ProSiteProfiles Protein kinase domain profile. 46 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18666g00001 395 Gene3D Transferase(Phosphotransferase) domain 1 121 330 - -
Trme18666g00001 395 SUPERFAMILY Protein kinase-like (PK-like) 28 324 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18666g00001 Trme-Chr18666 3 1190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18666g00001 36 333 Receptor kinase-like Gene Family AT5G20050 46.624 2.07e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme18666g00001 Pkinase 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18666g00001 - K03327 lja:Lj0g3v0252549.1 649.047