Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme186273g00001 TGTCCAGGACCTAAAAAATTGGAATCAAATTTCTCATTTATGAGTCTCATGAATAGGAATAGAAAACAGGAGTCTAAAAAAACCAATTCAAGTTCAACCTCCTCCTCCTCATCTAAGTGGACAACGAGCTTTCTTAATGCCGCTTCTAGTATTCGAGCTTCAGCTGAGGCTGGAATGTCGAAGTTGAGTGGTGAAATTAACCAAGCATGGGGGACATCAAGTGATGGTGGGGGCAAGAGCAATAGCAGTGGTCAAGTGGAGCAATGCCCTCAATGTGATGCTAAGTTTTCCTCGGTCACTACTTTGGTGGATCATGTACAGAAAGTTCATGAAAGAAGCGGTAATCGATCTGCTGCAAAAGTTA 364 0.4258 CPGPKKLESNFSFMSLMNRNRKQESKKTNSSSTSSSSSKWTTSFLNAASSIRASAEAGMSKLSGEINQAWGTSSDGGGKSNSSGQVEQCPQCDAKFSSVTTLVDHVQKVHERSGNRSAAKV 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme186273g00001 121 Gene3D Classic Zinc Finger 88 112 - -
Trme186273g00001 121 SMART c2h2final6 87 110 IPR013087 -
Trme186273g00001 121 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 115 IPR013087 -
Trme186273g00001 121 MobiDBLite consensus disorder prediction 66 88 - -
Trme186273g00001 121 ProSitePatterns Zinc finger C2H2 type domain signature. 89 110 IPR013087 -
Trme186273g00001 121 MobiDBLite consensus disorder prediction 1 40 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme186273g00001 1 121 C2H2 Transcription Factor Family AT2G41835 39.669 3.65e-16 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme186273g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme186273g00001 - - lja:Lj5g3v0889470.1 168.318