Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme185999g00001 ATGTTTCTTGTAGTAGCAAGAGCTTCCACCAAGTTGCAGTGTATGTCCTCTTTTCTTGCAGAATTATCACTCGCGAGTCAGAAATTCGTATCCTACCTCCCTTCACGGGTGGCTGCGTCCGCCGTGTTTCTTGCACGGTGGACGTTAGACCCTTCACAGCCTCCTTGGGATGAATCTCTCCAGCAATTCACTACTTACAAGTCATGTGAATTGAAAAGTATTGTTTTTGATCTTCAAGCTCTTCAGCGGAAAATTGAGGACAATGTTTGTACCACAATCCACAAGAAGTATTCAGAACCCAAGGTATGA 309 0.4434 MFLVVARASTKLQCMSSFLAELSLASQKFVSYLPSRVAASAVFLARWTLDPSQPPWDESLQQFTTYKSCELKSIVFDLQALQRKIEDNVCTTIHKKYSEPKV 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme185999g00001 102 SMART Cyclin_C_2 2 102 IPR004367 -
Trme185999g00001 102 FunFam Cyclin A1 1 102 - -
Trme185999g00001 102 Pfam Cyclin, C-terminal domain 9 101 IPR004367 -
Trme185999g00001 102 SMART cyclin_7 1 80 IPR013763 -
Trme185999g00001 102 SUPERFAMILY Cyclin-like 2 101 IPR036915 -
Trme185999g00001 102 Gene3D - 1 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme185999g00001 Trme-Chr185999 119 427 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme185999g00001 2 101 Core Cell Cycle Gene Families AT5G25380 40.952 6.75e-23 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme185999g00001 K06627 - tpra:123897162 172.17