Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18584g00001 ATGTGCCGATTAAGAAATCGTGACACTAGTTCAAATGATGATACCGGTGCTAGAGCTAGCATATCAAGAATTGTTGTACTTGCGGAAGCCTTATTTGAGGTTCTAGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCCCATCCTTCTGTATCTTCTATTGGATCCGTTCCCGCACCTATCAATGTTGTGGAATCATTGCCTGTCAAGTTATATGAGAAGTCGCATAAAGAAGATACTACACAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCGTGCGAGTTCTGCCTTGTCATCATGAATTTCACAGAACATGTATAGACAAGTGGTTGAAGGAGATTCACAG 356 0.4101 MCRLRNRDTSSNDDTGARASISRIVVLAEALFEVLDEIHQQSVVLSSHPSVSSIGSVPAPINVVESLPVKLYEKSHKEDTTQCYICLVEYEDGDSVRVLPCHHEFHRTCIDKWLKEIH 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18584g00001 118 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 118 - -
Trme18584g00001 118 SUPERFAMILY RING/U-box 63 115 - -
Trme18584g00001 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 118 IPR013083 -
Trme18584g00001 118 ProSiteProfiles Zinc finger RING-type profile. 83 113 IPR001841 -
Trme18584g00001 118 FunFam Putative RING zinc finger domain superfamily protein 54 118 - -
Trme18584g00001 118 Pfam Ring finger domain 82 116 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18584g00001 Trme-Chr18584 291 1247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18584g00001 5 118 C3H Transcription Factor Family AT5G45290 76.522 3.86e-57 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18584g00001 - - cam:101492704 199.134