Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18571g00001 ATGGGAGAGAGTGGTTCTAGAGTTGTATATAGAGCTCGTTTTGATGAACATTTCCAGGCTGCTGTCAAGAAAGCAGACAGTGATGCTGATAGAGAATTTGAGAATGAAGTGAGTTTATTGAGCAAGATTCGGCATCAGAATATCATAAAACTCCTAGGCTATTGTATTCATGGTGAATCAAGGTTTCTTGTTTATGAGTTCATGGAGAGTGGTTCCTTGGAAACTCAATTGCATGGGCCTACTCGCGGATCGTCTTTAACTTGGTATATCCGTTTAAGAATTGCAATTGATGTTGCTAGGTGA 303 0.3993 MGESGSRVVYRARFDEHFQAAVKKADSDADREFENEVSLLSKIRHQNIIKLLGYCIHGESRFLVYEFMESGSLETQLHGPTRGSSLTWYIRLRIAIDVAR 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18571g00001 100 ProSiteProfiles Protein kinase domain profile. 1 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18571g00001 100 PANTHER OS01G0253100 PROTEIN 2 100 - -
Trme18571g00001 100 Gene3D Transferase(Phosphotransferase) domain 1 1 100 - -
Trme18571g00001 100 Pfam Protein tyrosine and serine/threonine kinase 10 99 IPR001245 GO:0004672|GO:0006468
Trme18571g00001 100 SUPERFAMILY Protein kinase-like (PK-like) 2 100 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18571g00001 Trme-Chr18571 715 1204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18571g00001 1 100 Receptor kinase-like Gene Family AT1G80640 49.038 1.85e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Trme18571g00001 PK_Tyr_Ser-Thr 2.8e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18571g00001 - - gmx:100811188 185.267