Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme185715g00001 ATGGTGTCCGGATCTGGAGCATGCGCAAAGAGAGTGGTGATCGACTCCCGTCACCACATGCTCGGCCGGCTTGCATCGATTGTAGCAAAGGAGCTTCTCAATGGTCAGAAGGTCGNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCAGAAGATGAAATACATGCGTTTCCTTCGTAAGCGTATGAACACTAAACCTTCTCATGGTCCTATTCACTTTCGTGCTCCTTCTAAGATCTTTTGGCGCACTGTTCGTGG 272 0.4118 MVSGSGACAKRVVIDSRHHMLGRLASIVAKELLNGQKVXXXXXXXXXXXXXXXXQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRG 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme185715g00001 91 Gene3D Ribosomal protein L13 7 91 IPR036899 GO:0003735|GO:0005840|GO:0006412
Trme185715g00001 91 SUPERFAMILY Ribosomal protein L13 12 91 IPR036899 GO:0003735|GO:0005840|GO:0006412
Trme185715g00001 91 PANTHER RIBOSOMAL PROTEIN L13 2 91 IPR005822 GO:0003735|GO:0005840|GO:0006412
Trme185715g00001 91 Pfam Ribosomal protein L13 10 91 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme185715g00001 Trme-Chr185715 8 279 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme185715g00001 1 91 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 76.923 6.98e-46 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme185715g00001 K02872 - thj:104822501 143.665