Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18560g00001 ATGGAAAGAAAGTCATGTAATGAAGCAGACATCGTGGATCAATCATTCATCTTACCTATTAACTTTAACAAACTTGTTGTGTTCGTCTCTAGGTATTTTATTGGAACACACATATTTCCTGATGTTTTGCTCAATGATATTGCTGGCCCGGAAGGAGATCCTCTACTTTTGAGTTTAAAACTCTCTGTAGATGTTTTGGTTGTTTCTTGTCCTTGTGCTTTGGGTCTTGCCACACCAACAGCAATCCTAGTTGGCACCTCACTTGGGGCAAGAAAAGGACTTCTTATCAGAGGAGGGGATGTGCTAGAACGCTTGGCCGGTGTAAATTATATTGCTCTAGACAAG 345 0.4087 MERKSCNEADIVDQSFILPINFNKLVVFVSRYFIGTHIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLAGVNYIALDK 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18560g00001 115 PANTHER ATP7, ISOFORM B 9 115 - -
Trme18560g00001 115 Pfam E1-E2 ATPase 27 92 - -
Trme18560g00001 115 SUPERFAMILY Calcium ATPase, transmembrane domain M 50 107 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18560g00001 Trme-Chr18560 63 1287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18560g00001 9 115 Primary Pumps ATPases AT1G63440 39.450 2.14e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18560g00001 K17686 - gmx:100127402 159.458