Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme185539g00001 ATGGGTCTTAGAGATGTCGGTGCTTCACTTCCACCTGGGTTTCGGTTTTATCCAAGTGATGAAGAGTTGGTTCTTCATTACCTTTACAAAAAGATCACAAATGAGGATGTTCTCAAAGGTACCTTGGAGGAAATTGACTTGCATACATGCGAGCCTTGGCAACTTCCTG 169 0.432 MGLRDVGASLPPGFRFYPSDEELVLHYLYKKITNEDVLKGTLEEIDLHTCEPWQLP 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme185539g00001 56 Gene3D NAC domain 19 56 IPR036093 GO:0003677|GO:0006355
Trme185539g00001 56 Pfam No apical meristem (NAM) protein 11 56 IPR003441 GO:0003677|GO:0006355
Trme185539g00001 56 SUPERFAMILY NAC domain 8 56 IPR036093 GO:0003677|GO:0006355
Trme185539g00001 56 ProSiteProfiles NAC domain profile. 10 56 IPR003441 GO:0003677|GO:0006355
Trme185539g00001 56 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme185539g00001 Trme-Chr185539 98 266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme185539g00001 1 56 NAC Transcription Factor Family AT4G28530 54.167 4.02e-19 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme185539g00001 NAM 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme185539g00001 - - gmx:100783645 117.857