Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme185407g00001 AAGCTGTGGAATGTGCAAAGTGGCCAACAGTTGTTCACCTTCAATTTTGATTCTCTCACAAGAAACTGGGGAATTTTGCTTGTCGTTAAGGGTCCACAGGGTAGAATCAACAGAGCCATTTGGGGAACCCTCAACGAAACAATGATCAGTGGCGGAGAAGACTCTGTCATTCGAATCTGGGATTCTGAGGTATTCCTTATGGCTATTTACTAG 213 0.4413 KLWNVQSGQQLFTFNFDSLTRNWGILLVVKGPQGRINRAIWGTLNETMISGGEDSVIRIWDSEVFLMAIY 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme185407g00001 70 ProSiteProfiles Trp-Asp (WD) repeats profile. 29 61 IPR001680 GO:0005515
Trme185407g00001 70 ProSitePatterns Trp-Asp (WD) repeats signature. 48 62 IPR019775 -
Trme185407g00001 70 Gene3D - 1 65 IPR015943 GO:0005515
Trme185407g00001 70 SUPERFAMILY WD40 repeat-like 2 61 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme185407g00001 Trme-Chr185407 2 428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme185407g00001 1 63 Eukaryotic Initiation Factors Gene Family AT2G46280 38.235 4.17e-17 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme185407g00001 K03246 - gmx:100793485 86.6557