Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme185330g00001 ATGGATAAAGCTTCACTTTTGGGTGATGCTATATCTTACATAACTGAGCTGAAAACAAAGCTTGTGAAAACTGAATTTGATAAAGATGAATTGGAAAAGCAACTTGATGCAGTGAAAAATGAGCTTCAGAAAGTCAATGAAAACTCGTCTCATCCACCACCACAACCTCAACCACAACAANNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGTGAAGATTATAGGTTGGGATGCAATGATAAGGGTCCAATGCAGTAAGAAAAACCACCCTGCAGCGAAGTTGATGGCGGCGTTGATGGAGCTTGACCTAGAAGTGCACCACGCGAGTGTTTCCGTGGTAAATGATTTGATGATACAACAAGCAACCGTGAAGATGGGGAGTCGTTTTTACACGCAGGAGCAGCTTCG 431 0.3735 MDKASLLGDAISYITELKTKLVKTEFDKDELEKQLDAVKNELQKVNENSSHPPPQPQPQQXXXXXXXXXXXXXXXXXXVKIIGWDAMIRVQCSKKNHPAAKLMAALMELDLEVHHASVSVVNDLMIQQATVKMGSRFYTQEQLR 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme185330g00001 144 PANTHER MYC 1 144 IPR045084 GO:0003700|GO:0006355
Trme185330g00001 144 Coils Coil 14 48 - -
Trme185330g00001 144 MobiDBLite consensus disorder prediction 37 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme185330g00001 Trme-Chr185330 1 431 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme185330g00001 1 144 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 59.722 1.15e-47 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme185330g00001 K13422 - csav:115717079 176.407