Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme185329g00001 ATGGGTAGAGCTCCTTGTTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCTCCAGAAGAAGATACTAAGCTCAAATCTTACATAGAACAACATGGTACTGGTGGTAACTGGATTGCTCTTCCACAAAAAATTG 136 0.4118 MGRAPCCDKANVKKGPWSPEEDTKLKSYIEQHGTGGNWIALPQKI 45
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme185329g00001 45 MobiDBLite consensus disorder prediction 1 20 - -
Trme185329g00001 45 SUPERFAMILY Homeodomain-like 9 44 IPR009057 -
Trme185329g00001 45 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 45 IPR017930 -
Trme185329g00001 45 PANTHER OS09G0431300 PROTEIN 1 45 - -
Trme185329g00001 45 ProSiteProfiles Myb-like domain profile. 9 45 IPR001005 -
Trme185329g00001 45 Pfam Myb-like DNA-binding domain 14 42 IPR001005 -
Trme185329g00001 45 CDD SANT 16 38 IPR001005 -
Trme185329g00001 45 Gene3D - 6 45 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme185329g00001 1 45 MYB Transcription Factor Family AT3G49690 93.333 6.84e-26 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme185329g00001 Myb_DNA-binding 8.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme185329g00001 K09422 - gmx:778079 103.219