Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18527g00001 AGAACAACGATCATCATAGCTCACCGTCTTTCCACAATTCGAAAAGCCGATTCAATAGTAGTTCTTCAATCAGGAAAAGTGGTTGAGTGTGGTTCACACAATGAGCTACTTCAACTAAACAATGGACAAGGTGGAATTTACACCAAAATGCTTCATTTGCAACAAATAAGTCAAAATGAAAATGCACAGCATCAAATAAACAAGAGCCCTCGTGCAATGGAAAATCTAATAACAAGTTCACATTCAAGCTGGCAAAGTACACCAATTCATCACGCATTTAGCGCCGCACAACCATTTAGTGCCATATATTCAATCAGTGCTATAGATTCTAGCTTTGATGATGACTACAGCAGTGAAAACTTGGAGAAACCTTACAGTTCCAACATCTCTCACTGGCGTTTACTACAAATGAACGCTCCTGAATGGAAGCATGCTTTGTTTGGATGCTTAGGTGCCATTAGCTCTGGAATGTGCCAGCCATTTTATTCCTATTGCTTAGGAATAGTTGCTTCTGTCTACTTCATAGATGATAACTCTCGCATCAAATCACAAATCAGGTTGTACTCAATCATCTTCTGCTGTATAGCTGCTGTGAACTTCATCTCAGGCATCATTCAACATTACAATTTTTCCATCATGGGAGAGCGTTTGTTGAAAAGGGTGCGAGAGAATTTACTAGAGAAGGTGTTGACCTTTGAGATAGGCTGGTTTGATCAAGAGGAGAACACAAGTGCAGCAATCTGCGCGCGTTTGGCTACCGAAGCTAACTTGGTTCGATCCCTTGTTGCAGAACGAATGTCGTTGTTAGTTCAGGTTTTCGTCACTGCTTTGCTGGCTTTTGTACTTGGTTTAATCGTTTCATGGAGGGTAGCTATTGTTATGATAGCTATGCAGCCTTTGGTCATTGCATGTCTCTATTCAAAAACCGTTCTCATGAAGAGTATGTCAGGAAAAGCGAAAAATGCTCAAAGAGATGCTAGTCAATTAGCAATGGAAGCTACTACCAACCACAGGACTATCGCTGCATTCTCTTCCGAGAAAAGGATATTAAATTTGTTCAGAACTGCTATGGATGGTCCAAAGAAGGAAAGCATCAAACAATCATGGATTTCAGGTTCTATATTGTCTATGTCACAATTCATGACAACAGCATCTATAGCTTTGACTTTTTGGAAGCATGACTTCTGA 1188 0.4024 RTTIIIAHRLSTIRKADSIVVLQSGKVVECGSHNELLQLNNGQGGIYTKMLHLQQISQNENAQHQINKSPRAMENLITSSHSSWQSTPIHHAFSAAQPFSAIYSISAIDSSFDDDYSSENLEKPYSSNISHWRLLQMNAPEWKHALFGCLGAISSGMCQPFYSYCLGIVASVYFIDDNSRIKSQIRLYSIIFCCIAAVNFISGIIQHYNFSIMGERLLKRVRENLLEKVLTFEIGWFDQEENTSAAICARLATEANLVRSLVAERMSLLVQVFVTALLAFVLGLIVSWRVAIVMIAMQPLVIACLYSKTVLMKSMSGKAKNAQRDASQLAMEATTNHRTIAAFSSEKRILNLFRTAMDGPKKESIKQSWISGSILSMSQFMTTASIALTFWKHDF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18527g00001 395 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 146 391 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme18527g00001 395 SUPERFAMILY ABC transporter transmembrane region 133 391 IPR036640 GO:0005524|GO:0016020
Trme18527g00001 395 Gene3D - 1 73 IPR027417 -
Trme18527g00001 395 Pfam ABC transporter transmembrane region 147 391 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme18527g00001 395 CDD ABC_6TM_Pgp_ABCB1_D2_like 135 391 - -
Trme18527g00001 395 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 50 IPR039421 -
Trme18527g00001 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 54 IPR027417 -
Trme18527g00001 395 Gene3D ABC transporter type 1, transmembrane domain 96 392 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18527g00001 Trme-Chr18527 2 1290 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18527g00001 1 75 Calmodulin-binding Proteins AT2G36910 44.000 4.70e-11 62.8