Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme185226g00001 ATGAGTTCACCAGGTGTGAAGCTTAGAATCAATTCACCAAGACTTTCAAGTAAGAAAATTCAATCACATGGCCGGAAAAGCGTGTCGTCCACCACTACTAGTTCGGCCGGTAACCGGAGAAGTCTTTCGGATAGTTTCGCAATTGTGAAGTCATCAATGAATCCACAGAGAGATTTCAGAGAATCAATGGTGGAGATGATTGTTCAGAACAATATTAGAACATCAAAGGATTTGGAAGATCTTCTTGCTTGTTACCTTTCTTTGAATTCAGATGAGTATCATGAACTTATCATCAAAGTGTTCAAGCAAATTTGGTTTGATTTGACTGATAATCAGTAG 339 0.3835 MSSPGVKLRINSPRLSSKKIQSHGRKSVSSTTTSSAGNRRSLSDSFAIVKSSMNPQRDFRESMVEMIVQNNIRTSKDLEDLLACYLSLNSDEYHELIIKVFKQIWFDLTDNQ 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme185226g00001 112 ProSiteProfiles OVATE domain profile. 48 107 IPR006458 -
Trme185226g00001 112 Pfam Transcriptional repressor, ovate 52 108 IPR006458 -
Trme185226g00001 112 MobiDBLite consensus disorder prediction 1 39 - -
Trme185226g00001 112 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 18 110 IPR038933 GO:0045892
Trme185226g00001 112 NCBIfam uncharacterized plant-specific domain TIGR01568 47 109 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme185226g00001 Trme-Chr185226 114 452 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Trme185226g00001 Ovate 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme185226g00001 - - qsa:O6P43_016492 187.193