Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme184952g00001 ATGGCACTTCAATCCGCAACTGAACTCGGCGTATTTGAAGTCTTACAAAAAGCCGGTACAGATGTTAAACTATCCGCCGWTGAGATCGCTTCTCGTCTTTCCTGCACCAATCCAGATGCCTCCAAAATGTTAGATCGTATTCTCGCTCTTCTCGCCTCTCACTCCGTCATCAACTGTTCTGTACTTCCCGATCAACAAAACTTTGGATCCTTTCATAGATTCTACACTATGTCTCCTGTTGCCAAATTCTTTGCTCCTAATTCCGATGGCGTTTCTTTAGGACCCTTGATTGCTTTGCATCATGATAAGATCTTCTTAGATAGCTG 326 0.4356 MALQSATELGVFEVLQKAGTDVKLSAXEIASRLSCTNPDASKMLDRILALLASHSVINCSVLPDQQNFGSFHRFYTMSPVAKFFAPNSDGVSLGPLIALHHDKIFLDS 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme184952g00001 108 SUPERFAMILY "Winged helix" DNA-binding domain 1 87 IPR036390 -
Trme184952g00001 108 FunFam Caffeic acid 3-O-methyltransferase 1 84 - -
Trme184952g00001 108 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 108 IPR016461 GO:0008168
Trme184952g00001 108 PANTHER O-METHYLTRANSFERASE 1 102 IPR016461 GO:0008168
Trme184952g00001 108 Gene3D - 1 108 IPR036388 -
Trme184952g00001 108 Pfam Dimerisation domain 1 52 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme184952g00001 Trme-Chr184952 35 360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme184952g00001 1 108 Monolignol Biosynthesis Gene Families AT1G77520 42.478 1.56e-21 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme184952g00001 K13066 - gmx:100803633 149.058