Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme184676g00001 AGAATTAGTTTCGAAGAGATTCATGCAGCAACAAGAGGGTTCTCTGAAGAGAATTTGATTGCTGTAGGAGGGAATGGAAAGGTATATAAAGGGATTTTGCAAGGAATTGAAGTTGCGGTCAAGAGAATCCCTCAAGAAAGAGAAGATGGAATGAGAGAGTTTTTGGCTGAGGTTTCAAGCATAGGAAGAATGAAACACAGAAATTTAGTAGGATTAAGAGGTTGGTGCAAAAAAGAAAAGGGAAACTTGATTCTAGTTTATGACTTCATGAACAATGGAAGTTTAGACAAATGGATCTTTGAGTGTGAAGAAGGAAAGATGTTAACATGGGAAGAGAGGATTCAAGTTTTGAAAAATGTAGCCGCAGGGATTCTTTACCTGCATGAGGGTTGGGAAGTTAAGGTTTTGCATAGGGATATCAAAGCAAACAATGTTTTACTTGACAAGGAAATGAATGCTAGATTGGG 467 0.379 RISFEEIHAATRGFSEENLIAVGGNGKVYKGILQGIEVAVKRIPQEREDGMREFLAEVSSIGRMKHRNLVGLRGWCKKEKGNLILVYDFMNNGSLDKWIFECEEGKMLTWEERIQVLKNVAAGILYLHEGWEVKVLHRDIKANNVLLDKEMNARLG 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme184676g00001 156 SMART serkin_6 14 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme184676g00001 156 FunFam Os07g0541700 protein 90 156 - -
Trme184676g00001 156 PANTHER - 1 156 - -
Trme184676g00001 156 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 1 89 - -
Trme184676g00001 156 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Trme184676g00001 156 Gene3D Transferase(Phosphotransferase) domain 1 90 156 - -
Trme184676g00001 156 Pfam Protein kinase domain 16 155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme184676g00001 156 SUPERFAMILY Protein kinase-like (PK-like) 3 155 IPR011009 -
Trme184676g00001 156 ProSiteProfiles Protein kinase domain profile. 14 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme184676g00001 156 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme184676g00001 Trme-Chr184676 2 468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme184676g00001 1 155 Receptor kinase-like Gene Family AT4G04960 69.620 1.03e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme184676g00001 Pkinase 6.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme184676g00001 - - gmx:100776006 295.434