Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1845g00001 ATGATATTGCTCAAAAACAAAATTTTGAAGAGCATAGTTTTAAGGCGAACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCTCCTAGGATCGTTTCATTGAGGAGGGATAGTCTGGATATAAAAGAGCAAGACTATTACGAATCACTATACAATGAAAGTCAGTCACAGTTTAATACGTATGTCGAAGCAAATACTCTGACAAATAATTATGCTCATATTTTTGACCTCCTCACACGACTACGTCAGGCTGTGGATCATCCATATCTTGTGGTGTATTCTCCAACTGCCGCAGCACTAAAAGGTGAAAACTTGGCTAGCAATGGTGAACAAGAATGTGGCCTTTGTCACGATACTGTTGAAGATCCTGTGGTTACCTCTTGTCAGCATACTTTTTGCAAGGGATGCTTGATAGATTTCTCTGCTTCTTTGGGACGTGTATCGTGCCCCTCATGCTCTAAATTACTCACTGTTGATTTGACTTCCAACAATGATGCTGTGGTTAATAAAACAACAATCAAGGGTTTCAGATCTTCAAGCATTTTAAACAGAATTCAGATCGAGAATTTTCAGACGAGTACTAAAATAGAGGCATTG 597 0.3936 MILLKNKILKSIVLRRTKIGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQSQFNTYVEANTLTNNYAHIFDLLTRLRQAVDHPYLVVYSPTAAALKGENLASNGEQECGLCHDTVEDPVVTSCQHTFCKGCLIDFSASLGRVSCPSCSKLLTVDLTSNNDAVVNKTTIKGFRSSSILNRIQIENFQTSTKIEAL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1845g00001 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 197 IPR013083 -
Trme1845g00001 199 ProSitePatterns Zinc finger RING-type signature. 128 137 IPR017907 -
Trme1845g00001 199 ProSiteProfiles Zinc finger RING-type profile. 113 153 IPR001841 -
Trme1845g00001 199 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 5 199 - -
Trme1845g00001 199 SMART ring_2 113 152 IPR001841 -
Trme1845g00001 199 Pfam Zinc finger, C3HC4 type (RING finger) 112 152 - -
Trme1845g00001 199 SUPERFAMILY RING/U-box 108 157 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1845g00001 1 199 RAD5 or RAD16-like Gene Family AT1G05120 72.059 1.72e-98 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1845g00001 K15083 - gmx:100786366 323.168