Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18438g00001 ATGGTACTTGAGTTTCTTGGAGACAGCTTGCTTCGTCTAGTCAAATACAATCGTTACAAAGGTCTTCCATTGAATAAAGTTAGGGAGATTTGTCAATGCATTTTGATTGGTTTGGATTACTTGCATAGAGAACATGGTATTATCCACACAGACCTAAAACTGGAAAATGTTCTTCTGGTTTCTACCATTGATCCTGCCAAAGACCCTGTTAGATCAGGAGTAACCCCAATTTTAGAGAGGCCTGAGGGAAACATAAACGGCACAGTTACTAGTCTTATCGAGAAAAAATTGAAAAGGAGAGCGAGGAGGGCAGTAGCTAAAATATCTGGACAACGAGCTTCAATGGGAGGAATGGGAGAAGCTCCGAAATCTGAGAGAAATATTGATGGGATTAATGTGAGATGCAAAGTGGTAGATTTTGGAAATGCGTGTTGGGCTGATAAGCCATTTGCAGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTTATACTGCAGGCTGGTTATTCCTTTTCTGTCGACATGTGGTCTTTTGCTTGTATCGCTTTCGAGCTTGCCACTGGTGATATGTTGTTTACTCCTAAGGTCGGACAAGGTTTTAGCGAGGATGAGGTATGA 621 0.4155 MVLEFLGDSLLRLVKYNRYKGLPLNKVREICQCILIGLDYLHREHGIIHTDLKLENVLLVSTIDPAKDPVRSGVTPILERPEGNINGTVTSLIEKKLKRRARRAVAKISGQRASMGGMGEAPKSERNIDGINVRCKVVDFGNACWADKPFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEV 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18438g00001 206 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Trme18438g00001 206 Pfam Protein kinase domain 1 61 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18438g00001 206 Pfam Protein kinase domain 134 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18438g00001 206 SUPERFAMILY Protein kinase-like (PK-like) 1 197 IPR011009 -
Trme18438g00001 206 Gene3D Transferase(Phosphotransferase) domain 1 2 205 - -
Trme18438g00001 206 ProSiteProfiles Protein kinase domain profile. 1 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18438g00001 206 SMART serkin_6 1 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18438g00001 206 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 123 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18438g00001 Trme-Chr18438 563 1183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18438g00001 1 205 EF-hand Containing Proteins AT5G22840 41.634 3.87e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Trme18438g00001 Pkinase 1.5e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18438g00001 K08832 - gmx:100811724 363.614