Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme184364g00001 ATGCCAAACGGTTCACTTCACGATCTATTACATTCTACAAATAAACCGCCCGGTTGGACCAAACGGTTCCGGTTCGCATTACAAGTTGCGAAAGCGGTTCGAACGTTGCACGGTTCAAATCCACCGGTGATTCANNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAGACTCGGTGATTTCGGTCTTGCTCTTAGAGGACACGTGGAGGATGTTCGTGTTAAGTGTACGCCACCGGCGGGGACGTTAGGGTATCTCGATCCATGCTATCTTGCGCCGGAGGATCTTAGTGCGAAGAGTGATGTGTTCAGTTTCGGGATCTTGTTGTTGGAGATAATCAGTGGAAGGAATGCTATTGATGTTA 379 0.4222 MPNGSLHDLLHSTNKPPGWTKRFRFALQVAKAVRTLHGSNPPVIXXXXXXXXXXXXXXXXXRLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEIISGRNAIDV 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme184364g00001 126 SUPERFAMILY Protein kinase-like (PK-like) 1 122 IPR011009 -
Trme184364g00001 126 PANTHER OS01G0253100 PROTEIN 1 125 - -
Trme184364g00001 126 Gene3D Transferase(Phosphotransferase) domain 1 1 126 - -
Trme184364g00001 126 Pfam Protein tyrosine and serine/threonine kinase 1 120 IPR001245 GO:0004672|GO:0006468
Trme184364g00001 126 ProSiteProfiles Protein kinase domain profile. 1 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme184364g00001 Trme-Chr184364 1 379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme184364g00001 1 126 Receptor kinase-like Gene Family AT3G59420 45.802 1.19e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trme184364g00001 PK_Tyr_Ser-Thr 4.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme184364g00001 - - cam:101503747 205.682