Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18378g00001 ATGACGGGTAAAATACCTGAGGAGCTTGCAAGTATCCCTATTCTTGAAATTGTAGATTTATCTAACAACAAGTTCAATGGCCCCATACCTGAAAAGTTTGGTAGTTCATCAAGTTTACATCTTCTCAACGTGTCTTTCAACAATATCTCAGGTTCAATACCAAATGCGAAGACATTTAAATTAATGAATAACAGTGCATTTGTTGGAAACTCGGAGCTATGCGGAGCACCTCTAAGACCATGTTTTGAGAGAGTAGGAATATTTGGTAGCAAAGGAACTTGGAAGCTTACACATATTTTGTTACTCTCTGTAGGGTTGCTAATAATCCTTCTGGTATTGGCTTTTGGAATACTTCATTTCAGAAAGGGATTTAAAAGTCAATGGAAAATGGTTTCATTTGTTGGACTTCCTCGATTCACAGCAAATGATGTCTTGACGAGCTTCAGCATTGTTGCCACGGAACATACACATATTCCATCACCATCAACCATAGTTACAAAAACAGTTCTTCCAACAGGTATAACAGTATTAGTCAAGAAGATTGAATGGGAAAATAGGAGCATTAATGGGGTGTCAGAATTTATAATGAGACTAGGAAATGCAAGGCACAAGAATTTAATCAGATTGTTGGGTTTTTGCCACAACCAACAACTAGTTTACCTTTTGTATGATTACTTGCCAAATGGAAACTTGGCTGAGAAAATTGGAATGAAATGGGATTGGGCAGCTAAATTCAGAACAGTGGTTGGAATTGCAAGGGGACTGTGCTTTCTTCACCATGAATGTTACCCGGCTATACCACACGGAGACTTGAAATCTAGCAACATTGTATTCGATGAAAATATGGAACCCCATTTGGCTGAATTTGGGTTTAAACAAGTCTTACAGTTGCGCAATGGCGCATCTCCAACGAAAACTATGCAGGAAACAGGTATGACTAAAGTTTGTGCAGCGTCCGTAAGAATGAATTAA 972 0.3837 MTGKIPEELASIPILEIVDLSNNKFNGPIPEKFGSSSSLHLLNVSFNNISGSIPNAKTFKLMNNSAFVGNSELCGAPLRPCFERVGIFGSKGTWKLTHILLLSVGLLIILLVLAFGILHFRKGFKSQWKMVSFVGLPRFTANDVLTSFSIVATEHTHIPSPSTIVTKTVLPTGITVLVKKIEWENRSINGVSEFIMRLGNARHKNLIRLLGFCHNQQLVYLLYDYLPNGNLAEKIGMKWDWAAKFRTVVGIARGLCFLHHECYPAIPHGDLKSSNIVFDENMEPHLAEFGFKQVLQLRNGASPTKTMQETGMTKVCAASVRMN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18378g00001 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Trme18378g00001 323 SUPERFAMILY Protein kinase-like (PK-like) 164 299 IPR011009 -
Trme18378g00001 323 FunFam Leucine-rich repeat receptor-like protein kinase TDR 139 225 - -
Trme18378g00001 323 Pfam Protein kinase domain 172 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18378g00001 323 ProSiteProfiles Protein kinase domain profile. 128 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18378g00001 323 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 310 - -
Trme18378g00001 323 Gene3D Transferase(Phosphotransferase) domain 1 162 321 - -
Trme18378g00001 323 SUPERFAMILY L domain-like 3 81 - -
Trme18378g00001 323 Gene3D Ribonuclease Inhibitor 1 85 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18378g00001 Trme-Chr18378 155 1126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18378g00001 1 56 Receptor kinase-like Gene Family AT5G51350 37.500 7.66e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme18378g00001 Pkinase 2.4e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18378g00001 - - mtr:11413853 485.337