Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme183750g00001 ATGGCGAAGATTCATGGATTTAAGCTCAAGAGGTGCCTTGTCTGGTTTTCTAGATGTGTCTTTAAAAACAAACAGATCCGACCTGACTATCATCACTTTGGCAGTCTTTCTCATTCTCCAACAATGAAGATTCTCAGGTGGGGTCGTAAGCTTACGGAAGGTGCCATGTCACTTTTTAATAGGCCGAGTTATGTCCGGTTAGGATCCGACCCAAARTTTAGCGTGCCGAAGGGACACATGGTCGTGTATGTGGGACGGAAAGAGGAAGAGATAATTAGGGTTATGGTGCCTGTGATATACTTCAACCATCCGTTGTTTGTTGAATTGCTTAGAGAGGTTGAGGAGGAGTATGGGTTCAACCACCAAGGGGGGATCACGATACCATGCCGGTTCACGGAGTTTGAACGAGTCAAGACATGGATTGCATCAGGATCC 435 0.4598 MAKIHGFKLKRCLVWFSRCVFKNKQIRPDYHHFGSLSHSPTMKILRWGRKLTEGAMSLFNRPSYVRLGSDPKFSVPKGHMVVYVGRKEEEIIRVMVPVIYFNHPLFVELLREVEEEYGFNHQGGITIPCRFTEFERVKTWIASGS 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme183750g00001 145 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 57 136 IPR003676 GO:0009733
Trme183750g00001 145 Pfam Auxin responsive protein 69 138 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme183750g00001 Trme-Chr183750 36 470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme183750g00001 70 134 Calmodulin-binding Proteins AT3G43120 46.154 1.30e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme183750g00001 K14488 - mtr:25480991 225.713