Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme183744g00001 ACCAATACGCAAAACTCATCTCTACCGTCGCATCTTTGTCGCAACTTTTCCATCCTCGAGATATGTAACGCCACAAACAACTTTGACGAACTCTTCATTGTTGGCGTCGGAGGATTCGGCCATGTGTACAAAGGTTACATCGACGAAGGTTTAACACCGGTCGCAATAAAACGCCTCAAGCCAGGTTCACATCAAGGCGAAAATGAGTTCATCAACGAGATAGATATGCTCTCGAAGCTTCGTCACATTNNNNNNNNNNANNNNNNNNNNANNNNNNNNGAGAATAACGAAATGATCATCGTCTATGATTTCATGCGCGTGGGTTAA 327 0.4037 TNTQNSSLPSHLCRNFSILEICNATNNFDELFIVGVGGFGHVYKGYIDEGLTPVAIKRLKPGSHQGENEFINEIDMLSKLRHIXXXXXXXXXXENNEMIIVYDFMRVG 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme183744g00001 108 PANTHER OS07G0166700 PROTEIN 13 106 IPR045272 GO:0004714|GO:0006468
Trme183744g00001 108 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Trme183744g00001 108 Gene3D Phosphorylase Kinase; domain 1 13 104 - -
Trme183744g00001 108 FunFam receptor-like protein kinase FERONIA 1 104 - -
Trme183744g00001 108 ProSiteProfiles Protein kinase domain profile. 28 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme183744g00001 108 Pfam Protein tyrosine and serine/threonine kinase 34 108 IPR001245 GO:0004672|GO:0006468
Trme183744g00001 108 SUPERFAMILY Protein kinase-like (PK-like) 4 107 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme183744g00001 Trme-Chr183744 1 415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme183744g00001 1 108 Receptor kinase-like Gene Family AT5G38990 55.963 1.20e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme183744g00001 PK_Tyr_Ser-Thr 2.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme183744g00001 - - vvo:131630062 161.77