Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme183505g00001 ATGGAGGGCACCACTTGCGGATTAGTTTCATTAACTGGTCCTAGTGGAAATAATTGGCAAGTTCGATTAGTTGAGCAGGACAATTATCTATTCTTCCATCATGGATGGTCAACATTTGTGGGAGATCATCATTTAGAATATGGCGACCTTTTGGTTTTCCGATACGAGGGTCACCTGCATTTCACTGTGCAAGTNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTATTGAAGGACAGAAAAGTGACGCTAAGGAGACTTCTTCTTTGGATGTTGTTAGTGATCAGCAGGGTATTGCCGGTAGAGATCTATCCAAGTATGAG 366 0.3361 MEGTTCGLVSLTGPSGNNWQVRLVEQDNYLFFHHGWSTFVGDHHLEYGDLLVFRYEGHLHFTVQVXXXXXXXXXXXXXXXXXXXXXXXXXIEGQKSDAKETSSLDVVSDQQGIAGRDLSKYE 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme183505g00001 122 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 7 105 IPR044837 -
Trme183505g00001 122 Coils Coil 91 101 - -
Trme183505g00001 122 MobiDBLite consensus disorder prediction 88 122 - -
Trme183505g00001 122 CDD B3_DNA 9 65 IPR003340 GO:0003677
Trme183505g00001 122 SUPERFAMILY DNA-binding pseudobarrel domain 5 66 IPR015300 -
Trme183505g00001 122 ProSiteProfiles B3 DNA-binding domain profile. 1 69 IPR003340 GO:0003677
Trme183505g00001 122 Coils Coil 65 65 - -
Trme183505g00001 122 Gene3D - 1 68 IPR015300 -
Trme183505g00001 122 Pfam B3 DNA binding domain 8 64 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme183505g00001 9 65 B3 DNA Binding Superfamily AT3G18990 43.860 3.02e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme183505g00001 B3 2.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme183505g00001 - - gmx:100814386 123.635