Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1834g00001 TCGGAACTTTACACTGTTGTGACACCTGCGAGGAGTTACAAAATAGCTGAATTCATTAACAAAGCCGATGGCCATCTAGCTCAATGTCCTGAGCCTCCTAAAATATTTACTTTCCCAAGCCTTCCTGTTATGTCTGTGGAAGAAAAGTCTGCCGCACACTATGCATGTGTCTCTCCAATAGGATCATCTGAGATCATTATGTTGGGTGCAGTCAGAATCAAGAGCATGGTTGAAATGCTAGGGTTATCTCAGCAGATAAGGGAGAATGTATACCGTTTATTTCAGAGAATCCTACATCAACATACATCTCTCTTCTTCGACCGTCATATTGACCACATCATTTTGTGTTGCTTCTGTGCAGCTGCAAAGATTTCAAAACTGAGCCTGACTTTTAAGGAGGTTATAAGCAGCTATGTGAATCAACCACAGTGCAACCCACGAGTTTTTGATAGTGTATTTGTTGACTGGGCACTGGCATGCCAAGACTCGGCATCTGGTAAAAGAAAAGGACAGGAGCATGTCGACTTTGTTACATTCTGCAAAGATATATTCCTTCCCTCTGTAGAGCCACTGCTTTTGGAACTTTTCACTGAAGGGACAAGTGGCCAAAAGCGGAAGAAAATGGCGCAAGTTAAAATTGCATCCATCAAAAGTTGGTTGTCGCCGTCCGTCCATCCATTGGTCTCCTGA 690 0.4319 SELYTVVTPARSYKIAEFINKADGHLAQCPEPPKIFTFPSLPVMSVEEKSAAHYACVSPIGSSEIIMLGAVRIKSMVEMLGLSQQIRENVYRLFQRILHQHTSLFFDRHIDHIILCCFCAAAKISKLSLTFKEVISSYVNQPQCNPRVFDSVFVDWALACQDSASGKRKGQEHVDFVTFCKDIFLPSVEPLLLELFTEGTSGQKRKKMAQVKIASIKSWLSPSVHPLVS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1834g00001 229 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 65 198 IPR028309 GO:0006357|GO:0051726
Trme1834g00001 229 Gene3D - 43 218 - -
Trme1834g00001 229 SUPERFAMILY Cyclin-like 63 198 IPR036915 -
Trme1834g00001 229 Pfam Retinoblastoma-associated protein B domain 65 188 IPR002719 GO:0005634|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1834g00001 Trme-Chr1834 1 2783 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1834g00001 3 83 Core Cell Cycle Gene Families AT3G12280 37.037 8.25e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Trme1834g00001 RB_B 2.1e-28 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1834g00001 K04681 - gmx:100777429 174.096