Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18315g00001 GTTGTTTGTGCGGTTTGTGACACAGAACAGCCAGTTGCTCAAGTTTGCACTAACTGTGGTGTTAGAATGGGGGAATATTTCTGTGAAATCTGCAAATTCTTCGATGATGATACGGGGAAACAGCAGTTTCATTGTGATGATTGTGGGATCTGCAGGTACAATAGSTKTAWTTGA 174 0.408 VVCAVCDTEQPVAQVCTNCGVRMGEYFCEICKFFDDDTGKQQFHCDDCGICRYNXXX 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18315g00001 57 ProSiteProfiles Zinc finger CTCHY-type profile. 23 57 IPR017921 -
Trme18315g00001 57 ProSiteProfiles Zinc finger CHY-type profile. 1 21 IPR008913 GO:0008270
Trme18315g00001 57 Pfam CHY zinc finger 2 33 IPR008913 GO:0008270
Trme18315g00001 57 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 53 - -
Trme18315g00001 57 SUPERFAMILY Zinc hairpin stack 24 54 IPR037275 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18315g00001 1 52 C2H2 Transcription Factor Family AT3G18290 40.000 1.72e-07 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18315g00001 K10144 - gmx:100812246 119.783