Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme182942g00001 GTCACTAAGAAGACTGATGTGTGGAGTCTTGGGATACTCATTTTGGAAATTGTAACCGGAAAGTTTCCTGCTAATTTTATACAAGGGAGTGAGTTGAGTTTGGCGAATTGGGTGGAATCTATTGCGCCGGAAGCGTGGAGTAGTGAGGTGTTTGATAAAGATATGGCGTTAACTAGTAACAGTGAGGGAGAGATGGTCAAGCTTTTGAAGATTGCATTGGCTTGTTCTGATATGGATGTTGATAGGAGATTGGATTTGAAAGAAGCAGTTTCGAGAATTCAAGAGATACAAGAAGATACTATTAATGAGGATGATATGTATTCTTCTTCTTAA 333 0.3904 VTKKTDVWSLGILILEIVTGKFPANFIQGSELSLANWVESIAPEAWSSEVFDKDMALTSNSEGEMVKLLKIALACSDMDVDRRLDLKEAVSRIQEIQEDTINEDDMYSSS 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme182942g00001 110 ProSiteProfiles Protein kinase domain profile. 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme182942g00001 110 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 2 98 IPR046959 -
Trme182942g00001 110 Gene3D Transferase(Phosphotransferase) domain 1 1 109 - -
Trme182942g00001 110 SUPERFAMILY Protein kinase-like (PK-like) 2 97 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme182942g00001 Trme-Chr182942 140 472 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme182942g00001 1 109 Receptor kinase-like Gene Family AT5G35390 55.046 5.27e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme182942g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme182942g00001 - - lja:Lj2g3v0914400.1 152.525