Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18288g00001 GGTTGGCGACCGATATTCCTTTATGGCGGGGCTGCTGTAAACAGCTCTGTAGGTGGCAAAGGATCAGCAGGAAATCAAAAGTTATATGGATCCGTGGCTTCAACCGGAGCTGGTAAGCGGTTTACGTTGGCTGAAATCAATGCTGCAACGAATAATTTCGATGAGAGTTTGGTCATTGGAGTTGGAGGCTTTGGTAAGGTGTATAAAGGAGAGGTTGATGATGGCGTGCCCGCTGCAATTAAGCGCGCCAATCCGCATTCTGAACAAGGTCTGGCTGAATTCGAGACCGAAATCGAGATGCTCTCAAAACTAAGACACAGGCATTTGGTGTCTTTGATTGGTTTCTGTGAAGAGAAAAGTGAAATGATTTTGGTTTATGAATACATGGCAAATGGAACTCTAAGAAGTCATCTATTTGGTAGCGATCTCCCTCCACTAACTTGGAAGCAACGTCTCGAAGCCTGCATCGGTGCTGCAAGGGGACTTCACTACCTTCACACAGGAGCCGACCGTGGAATAATTCACCGAGATGTCAAAACAACCAATATACTGTTAGACGAGAATTTTGTAGCGAAAATGGCTGATTTCGGTTTGTCAAAAGACGGTCCTGCTTTTGAACATACTCATGTTAGCACTGCTGTGAAAGGAAGTTTCGGCTATCTCGATCCAGAGTATTTCAGAAGACAACAGTTAACCGAGAAATCAGACGTTTACTCTTTTGGAGTTGTTCTATTCGAAGCTGTTTGTGCTAGAGCTGTGATAAACCCTACCTTGCCTAAAGATCAGATCAATCTTGCAGAATGGGCAATGAGATGGCAAAGAGAAAGGTCACTCGAAAAAATCATCGATCCAAATCTTATAGGAAATTATWGCCCCGAATCATTGTCTAAGTTTGGGGAGATAGCMGAAAAATGTCTYGCSGATGATGGTAAAAGYCGTCCCACCATGGGAGAGGTGTTATGGCACTTGGAGTATGTCTTGCAGCTACACGAAGCTTGGCTCAACGCGGACAACAATAGCACAGAAAATTCCTTCTCTAGCAGTCAAGTTTTGAGCGGTCCACAAGACGGAGGAGTTGAAGTCGCGAAGGAGCATTCAAATCAAGATGAAGAGGTTGATTTGGATTCTAAAAATACTATTGATTAA 1146 0.438 GWRPIFLYGGAAVNSSVGGKGSAGNQKLYGSVASTGAGKRFTLAEINAATNNFDESLVIGVGGFGKVYKGEVDDGVPAAIKRANPHSEQGLAEFETEIEMLSKLRHRHLVSLIGFCEEKSEMILVYEYMANGTLRSHLFGSDLPPLTWKQRLEACIGAARGLHYLHTGADRGIIHRDVKTTNILLDENFVAKMADFGLSKDGPAFEHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEAVCARAVINPTLPKDQINLAEWAMRWQRERSLEKIIDPNLIGNYXPESLSKFGEIAEKCLADDGKSRPTMGEVLWHLEYVLQLHEAWLNADNNSTENSFSSSQVLSGPQDGGVEVAKEHSNQDEEVDLDSKNTID 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18288g00001 381 FunFam receptor-like protein kinase FERONIA 19 128 - -
Trme18288g00001 381 MobiDBLite consensus disorder prediction 338 354 - -
Trme18288g00001 381 ProSiteProfiles Protein kinase domain profile. 53 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18288g00001 381 SMART serkin_6 53 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18288g00001 381 Gene3D Transferase(Phosphotransferase) domain 1 129 350 - -
Trme18288g00001 381 ProSitePatterns Protein kinases ATP-binding region signature. 59 81 IPR017441 GO:0005524
Trme18288g00001 381 CDD STKc_IRAK 59 324 - -
Trme18288g00001 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Trme18288g00001 381 FunFam Receptor-like protein kinase FERONIA 129 344 - -
Trme18288g00001 381 Pfam Protein tyrosine and serine/threonine kinase 58 320 IPR001245 GO:0004672|GO:0006468
Trme18288g00001 381 MobiDBLite consensus disorder prediction 338 381 - -
Trme18288g00001 381 PANTHER OS07G0166700 PROTEIN 39 330 IPR045272 GO:0004714|GO:0006468
Trme18288g00001 381 Gene3D Phosphorylase Kinase; domain 1 20 128 - -
Trme18288g00001 381 MobiDBLite consensus disorder prediction 362 381 - -
Trme18288g00001 381 SUPERFAMILY Protein kinase-like (PK-like) 31 325 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18288g00001 Trme-Chr18288 1 1146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18288g00001 1 351 Receptor kinase-like Gene Family AT1G30570 77.493 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme18288g00001 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18288g00001 - - gmx:100791403 674.855