Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme182508g00001 ATGGATTACACACTAATCCACACTGGTTTCCAGGTTTTCAGCTGTTACGGTCAGTACTTTTGTCTACATTTTGAAACTTTTCAACTTGGAACTGCTCCTGTCTACATAGCTTTTTTGCGGTTTATGGGTGATGATAGCGAGGCAAAAAAGTATAGCTACAGTCTAGAGGTAGGCGGAAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCAAGAAGCATCAGGGAAAGCCACTCCAATATTCGCGACAGTTTTGACGGTCTCATTATTCAGAGGAATATGGCGCTCTTCTTTTCAGGTGGTGACCGGAAAGAGTTGAAGCTAAGGGTTACCGGTAGGATCTGGAAAGAGCAATGA 354 0.4435 MDYTLIHTGFQVFSCYGQYFCLHFETFQLGTAPVYIAFLRFMGDDSEAKKYSYSLEVGGNGRKMVWQGVPRSIRESHSNIRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme182508g00001 117 Pfam Seven in absentia protein family 11 110 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trme182508g00001 117 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 7 116 - -
Trme182508g00001 117 SUPERFAMILY TRAF domain-like 11 114 - -
Trme182508g00001 117 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 6 110 IPR008974 GO:0005515
Trme182508g00001 117 FunFam E3 ubiquitin-protein ligase SINAT5-like 4 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme182508g00001 Trme-Chr182508 60 413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme182508g00001 10 117 C3H Transcription Factor Family AT2G41980 72.222 1.04e-57 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme182508g00001 K04506 - qsa:O6P43_029684 208.379