Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18240g00001 ATGAAAATTGCACTAGGAGCTGCAAAGGGACTTGCTTTTCTTCACGAGGAAGCTGAACGACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAGAGTACAATGCCAAGCTCTCAGATTTCGGACTTGCAAAAGATGGTCCAGAGGGTGATAAAACTCATGTGTCTACCCGAGTTATGGGAACGTATGGTTACGCAGCACCAGAATATGTCATGACAGGAGAGAGAAGAAGGTTCTACAGGTTGATAGACCCTCGATTGGAAGGCCACTTCTCGATAAAAGGAGCTCAAAAAGCCGCCCAGTTGGCTGCTCACTGCCTTAGCCGAGATCCAAAAGCAAGACCACTAATGAGTGAAGTCGTAGAAGCTTTGAAGCCTCTCCCAAACCTAAAGGACATGGCTAGTTCATCATACTATTTCCAGACGATGCAAGCTGACCGATTTAGTGCAAGTCCGAATACTCGAAATGGTAGAACACAAGGAGGATCCGCCCGAAATGGACCACAACAAAGGAGCCTTTCAATATCACATGGTACTCATGCTTCTCCATTTCGCCATCGGTATCCTCAACATTCACCAAAGCCAACTGGAAAAGCACAAAGTTGA 618 0.4515 MKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGERRRFYRLIDPRLEGHFSIKGAQKAAQLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFSASPNTRNGRTQGGSARNGPQQRSLSISHGTHASPFRHRYPQHSPKPTGKAQS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18240g00001 205 ProSiteProfiles Protein kinase domain profile. 1 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18240g00001 205 Pfam Protein kinase domain 3 78 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18240g00001 205 PANTHER OS01G0588500 PROTEIN-RELATED 81 131 - -
Trme18240g00001 205 MobiDBLite consensus disorder prediction 152 205 - -
Trme18240g00001 205 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672|GO:0006468
Trme18240g00001 205 Gene3D Transferase(Phosphotransferase) domain 1 1 79 - -
Trme18240g00001 205 Gene3D Transferase(Phosphotransferase) domain 1 80 151 - -
Trme18240g00001 205 SUPERFAMILY Protein kinase-like (PK-like) 2 148 IPR011009 -
Trme18240g00001 205 MobiDBLite consensus disorder prediction 152 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18240g00001 Trme-Chr18240 60 1408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18240g00001 1 128 Glycoside Hydrolase AT3G07070 47.977 3.79e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme18240g00001 Pkinase 6.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18240g00001 - - gmx:100807510 361.688