Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18234g00001 ATGCTTGGTGCTGCTCAAGGATTACAGTATCTACATGAGGGATTGGAAATTCAGGTGATCTATAGAGATTTCAAATCATCAAATGTGCTGTTGGACAAGGAATTCCATCCTAAGCTCTCAGATTTTGGTCTTGCTAGGGANGGCCCAACAGGTGACAAGACTCATGTCTCTACTGCGGTAGTTGGGACAAGGGGCTATGCTGCACCAGAGTATCTTGAAACAGGTCATCTAAAATCAAAGAGNGACGTTTGGAGTTTTGGTGTAGTATTGTATGAGATTCTCACAGGAAGACGAACAATTGAAAGAAATCTTCCAATAGCGGAACAAAAGCTTATAGAATGGGTTAAAAACTACCCTGCTGATACTAGCAGATTCAGCTTGATTATAGACCCTCGACTCGCGAAACAATATTCTCTTGATTCAGCTAGGAAAATTGCTAAGTTGGCAGATAGTTGCTTGAAGAAGAATGCTGAAGATAGGCCATCAATGAGTCAAGTAGTGGAAAGTTTGAAA 513 0.4094 MLGAAQGLQYLHEGLEIQVIYRDFKSSNVLLDKEFHPKLSDFGLARXGPTGDKTHVSTAVVGTRGYAAPEYLETGHLKSKXDVWSFGVVLYEILTGRRTIERNLPIAEQKLIEWVKNYPADTSRFSLIIDPRLAKQYSLDSARKIAKLADSCLKKNAEDRPSMSQVVESLK 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18234g00001 171 PANTHER OS01G0588500 PROTEIN-RELATED 1 171 - -
Trme18234g00001 171 Gene3D Transferase(Phosphotransferase) domain 1 1 171 - -
Trme18234g00001 171 ProSiteProfiles Protein kinase domain profile. 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme18234g00001 171 SUPERFAMILY Protein kinase-like (PK-like) 1 168 IPR011009 -
Trme18234g00001 171 ProSitePatterns Serine/Threonine protein kinases active-site signature. 19 31 IPR008271 GO:0004672|GO:0006468
Trme18234g00001 171 Pfam Protein kinase domain 4 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme18234g00001 Trme-Chr18234 1 1381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18234g00001 2 170 Glycoside Hydrolase AT3G07070 50.888 1.82e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme18234g00001 Pkinase 6.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18234g00001 - - gmx:100305390 295.434