Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme182166g00001 GTTGAACATGTGGGAGGAGATATGTTTGAGAGCGTTCCTGCAGGGGATGCCATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGAACACTGCTTGAAGCTGTTGAAAAATTGTTACAAAGCTATTCCTGAGGATGGAAAGGTTATTGTTGTGGACTTAATCCTTCCCACCAAGCCGGAGACAACAGGGAGTGCAAAGTTTGGTTTCGCGTCTGATCTTTTAATGATGACTCAAAATCCAGGAGGAAAAGAGAGAACTGAGCAAGAATTCATAGAATTGGCAAAAGGATCTGGATTCAGTGGCATCAAACCTATTTGTTGTGTATCTGGACTATGGGTTATTGAGTTCTTTAAGTAG 360 0.4111 VEHVGGDMFESVPAGDAIFMKWILHDWSDEHCLKLLKNCYKAIPEDGKVIVVDLILPTKPETTGSAKFGFASDLLMMTQNPGGKERTEQEFIELAKGSGFSGIKPICCVSGLWVIEFFK 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme182166g00001 119 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 117 IPR029063 -
Trme182166g00001 119 Gene3D Vaccinia Virus protein VP39 1 109 IPR029063 -
Trme182166g00001 119 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 119 IPR016461 GO:0008168
Trme182166g00001 119 PANTHER O-METHYLTRANSFERASE 1 102 IPR016461 GO:0008168
Trme182166g00001 119 Pfam O-methyltransferase domain 1 101 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme182166g00001 Trme-Chr182166 2 472 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme182166g00001 1 119 Monolignol Biosynthesis Gene Families AT5G54160 62.185 8.58e-50 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme182166g00001 K13066 - gmx:100789402 200.29