Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme181640g00001 ATGTTTGGAAGAGCACCTAAGAAAAGTGATAACACTAAATACTATGAAATTCTTGGCGTTTCCAAAAGCGCTTCTCCTGATGATTTGAAGAAAGCTTACAAAAAAGCTGCTATCAAGAATCATCCTGATAAGGGTGGCGATCCTGAAAAGTTCAAAGAGCTTGCACAAGCTTATGAGGTTTTGAGTGATCCTGAGAAGCGTGAGATATATGATCAGTATGGTGAAGATGCTCTTAAGGAAGGGATGGGTGGTGGTGGCGGTGGCCATGACCCATTTGATATCTTTTCGTCTTTCTTTGGTGGTGGTGGATTTCCAG 316 0.4209 MFGRAPKKSDNTKYYEILGVSKSASPDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGGGGFP 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme181640g00001 105 CDD DnaJ 14 63 IPR001623 -
Trme181640g00001 105 FunFam dnaJ protein homolog 10 105 - -
Trme181640g00001 105 Pfam DnaJ domain 13 71 IPR001623 -
Trme181640g00001 105 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Trme181640g00001 105 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Trme181640g00001 105 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 102 IPR044713 GO:0006457|GO:0030544
Trme181640g00001 105 Gene3D DnaJ domain 10 105 IPR036869 -
Trme181640g00001 105 SMART dnaj_3 12 66 IPR001623 -
Trme181640g00001 105 PRINTS DnaJ domain signature 15 33 IPR001623 -
Trme181640g00001 105 PRINTS DnaJ domain signature 66 85 IPR001623 -
Trme181640g00001 105 PRINTS DnaJ domain signature 46 66 IPR001623 -
Trme181640g00001 105 SUPERFAMILY Chaperone J-domain 8 104 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme181640g00001 Trme-Chr181640 13 438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme181640g00001 5 78 C2H2 Transcription Factor Family AT1G74250 39.759 3.60e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme181640g00001 K09503 - qsa:O6P43_028603 184.111