Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme18158g00001 ATGATTGTGATTATTGGAGGTGTTCGAGCCATTTCGTCTTTGGCAAATGGATCAAGCTTTTACACTGCAGGTTCAGATGGAATGATATGCATGATAGATTTCACAACAGGAAATTTGCAGAAGAAATTTAAAGCCTCTTCGAAGGCAATATCTTGCATATCAGTTTCTCCGGATGGGAAGAAGGTAGCTACTGCAGCAGCACAATTGAAGATTTTTAACTGTTCTAATGAAAAAAAGATTCAAAAATTCTCTGGTCATCCTGGATCTGTCCGGTGTATGGTCTTCACTGAAGATGGCAAGTATATCCTCTCATCTTCCGTTGGGGAAAGAAACATTGCTGTTTGGAAATTAGATGGCGCTAAAAAGCAGTCAGCTAGTTGTGTTCTTGCAATGGAGCACCCTGCTGTCTTTCTTGATAGCAGGTGCATCGATAATGGAGAAGATGATGAGGCTGGCATATGCGTTTTGGCCATATCAGAAATTGGTCTTTGTTACATTTGGTTTGGAAATAGTATTGATGAACTACGAACTGCAAAACCCACGAAAATATCATTATCTTTGGATGCCATCTCCACCAAAAATTACAAGGGTGCACTTCCGGCAATATATGCTGCAAAATTACAAAGCACCCAGAAGCCATCCTCTGGGCAGGTTTTTCTTGTTTATGGGATGCTTGTAAAACCATCATTTCAAAATGTTCTAGTGCATTCCGGTACAGAT 720 0.4028 MIVIIGGVRAISSLANGSSFYTAGSDGMICMIDFTTGNLQKKFKASSKAISCISVSPDGKKVATAAAQLKIFNCSNEKKIQKFSGHPGSVRCMVFTEDGKYILSSSVGERNIAVWKLDGAKKQSASCVLAMEHPAVFLDSRCIDNGEDDEAGICVLAISEIGLCYIWFGNSIDELRTAKPTKISLSLDAISTKNYKGALPAIYAAKLQSTQKPSSGQVFLVYGMLVKPSFQNVLVHSGTD 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme18158g00001 240 SUPERFAMILY WD40 repeat-like 6 174 IPR036322 GO:0005515
Trme18158g00001 240 SMART WD40_4 76 116 IPR001680 GO:0005515
Trme18158g00001 240 SMART WD40_4 36 73 IPR001680 GO:0005515
Trme18158g00001 240 PANTHER OS03G0300300 PROTEIN 5 240 - -
Trme18158g00001 240 Gene3D - 3 182 IPR015943 GO:0005515
Trme18158g00001 240 ProSiteProfiles Trp-Asp (WD) repeats profile. 83 125 IPR001680 GO:0005515
Trme18158g00001 240 Pfam WD domain, G-beta repeat 78 116 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme18158g00001 8 117 U-box Gene Family AT2G33340 27.193 1.21e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme18158g00001 K14546 - gmx:100815458 396.741